Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name C4orf46P3
Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chr4). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chrX:77962597-77965212  UCSC
Coordinates (T2T) chrX:76397665-76400280  UCSC
Coordinates (hg19) chrX:77218094-77220709  UCSC
Strand +
Parental Sequence NM_001008393.4
Parental seq. overlap 1311 bp
Parental seq. overlap (%) 38.5%
Genomic Region Intragenic (ATP7A)
Retrocopy Summary C4orf46P3, located on chrX:77962597-77965212, is a retrocopy of the parental gene C4orf46. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name C4orf46
Full Name chromosome 4 open reading frame 46
Also known as RCDG1
Coordinate chr4:158666675-158671887
Strand -
Gene summary This gene encodes a small, conserved protein of unknown function that is expressed in a variety of tissues. There are pseudogenes for this gene on chromosomes 6, 8, 16, and X. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Feb 2013]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes C4H4orf46P3
Bonobo Pan paniscus C4H4orf46P2
Gorilla Gorilla gorilla C4H4orf46P3
Orangutan Pongo abelii C4H4orf46P3
Gibbon Nomascus leucogenys C7BH4orf46P3
Green monkey Chlorocebus sabaeus C7H4orf46P3
Crab-eating macaque Macaca fascicularis C5H4orf46P3
Rhesus Macaca mulatta C5H4orf46P3
Baboon Papio anubis C3H4orf46P3
Golden snub-nosed monkey Rhinopithecus roxellana C2H4orf46P1
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>C4orf46P3
TCCTCTCTCTTCTCCCTCATTTTCAGACCCTTCTTCAGCATCTTCCCTGGGCATTGCTGTGAGTTTAGGCCGGCCCGTTTTGAGCAGGAGCAGCAGCGGAACAGTAGACCTGCTGGAGGAAGTGGGGCTGCAGATCAGAGACACAGCATTTTCGTCAACCAAACTTCTTGAAGCCATATCTACAGTATCAGCTCAAGTGGAAGAGCTTGCCGTCAAATGTACGGAAAATGCACGTTTCCTTAAAACATGACGGGACCTCTTGAAAGAATGCTGTGATTCTTGGAAACCTGACAATTGATTTGGCATACTTAGCTCTTTGATAGTGACTGTGTAATAATTCATACTTCCTCATATATGATCATTTCACATGTGCCACATATATAGGATAATATCTAGCAGTTCTCTATATCTTCAGAATGAAGTTTTTCTTGGTTTTCTTGACCTTTGTAAAAGCAGAATACTGATTCTATTTTTGATGTTGATCAGTACTTGTTTATTCTTACACTTTCTGCCCTTCAAACTTTCATAAAATCCTTTACAAAATTTAATTTTATCAGTAGATAGTTAATATTAATTGTGCCACAGTGCTACCAGTAGCAAACTAAGTGGACCATTATTTGTTTTGCAGTAAGATGCCAAGCATGGCAGAATTAGAAGTTGAGCTTCATCTTATGGACCAAGGGAGATAACTTTAAGGTTCCAAGAAGAGTTGATTAACATAATACAAAGCTATTTTTTCTTCCTGTATTTAGCAGGAAGACTATAATTGTTTCTCTAAAAATGTATGAATCAGGACTTTGTTGACTTGAAGGAAAATGTTATCTTTTTCACAGAGATTTTAACTTTGATGATAGCTTTTAAAAACATGATAAATACTTTTGTCCTCAAATGATTATTTTAAAAAGTCTAAGAAGTCTTTATTTCAGAAAATGAAAGACTGTCTAGAAAGAACGAATTTTTTTTCCTATTTATTTCTATGGTTACTGCTTTTACACTTAATATTTTTTGTTTTCGGTATTTTTATATGTTTGATTGCTGTCTTTAAAGTGCCTTATCAGATTTATGGCTCTGTACTATGAATTTTGGAGCTTTACAAGTTATTTACATAACTCTAAGTTACTTTGCTTCCAATACATCAAATTTAAATAACATGATTGTTTTTATATTATTTGACCTTAGTGACAATGTCCTATTTTATTTGTTCTGTATCTTATGTCGCTTTTTGGTAGTTTGTATTATGTGTGAATGATTAAGCCAACTAATTCTGTACCATATATAACTTCTGGATATCTTTGATATGACATCTTAATTCTTTGTAGATATGGTGATGTGTACAGAATGATATTCTGAAGCTCCACAATGGTGCATTGAAAGGCTGCAGATGGATGGCCAAAGAATAGTTTTGTTTAGCATATTAGGTCTAGTTCTGGACACTGGACTTTTTTTTTTTTAAGTTAAAAGATCACACACAGGGTGTGATTTCTATACCAAAGATATGCTTATTTCAGTATGAGGAAAAATATTTTTCTTACATGTCCTGAAAATTGCAATTTT
>NM_001008393.4
CTTTCGGCTTTGGGCGCGAGTGGTTAAAAGACAGTTGGTGTCGGTTCGGCTTCTCGGGTCGGATTCCGCGGTCCCAACCCTTCCCCATGGCCGACCCTGAGGAGTTGCAGGTTTCTTCGCCGCCCCCGCCGCCTCCCTCTTCTCCCTCCTCTTCAGACGCCTCTGCAGCATCTTCCCCGGGCGGCCCAGTGAGTTTGGGCTGGCCAGTTCCGAGCAGGAGCAGCGGCCCAACGGTGGACCAGCTGGAGGAAGTGGAGCTGCAGATCGGAGACGCAGCCTTTTCATTAACCAAACTTCTTGAAGCCACATCTGCAGTATCAGCTCAAGTGGAAGAACTTGCCTTCAAATGTACAGAAAATGCACGTTTCCTTAAAACGTGGCGGGACCTCTTGAAAGAAGGCTATGATTCTTTGAAACCTGATGACTGATTTGGCATACTTCGTTGTTTAATAATGACTGCAATAATTCATACTTCTTATGTCATATTTTGTACATGTACCACACATATAGGATGACCTCTGTCCAGCAGTTCTGTATATACTCAGAATGAAATTTTTCTTGGTTTTCTTGGTTTTTGTGAAAGCAGAATACCGATGCTATTTTTGTTGCGGACCAGTACTTGTTTGTCCTTAAATACTTTATGCCTCTGAACTTTCATAGAATCCTTTATGAAAGTTAACTTCATCAATAGACGGTTAATATTAATAGAGCCACAGTGCTACCAGTAGCAAACTAGGTAGACCATTATTTGTTTTGCAACAAGATGCTAAGCATGGCAGACTTTGAAGTTGCGTTTCATCTTAAGGACCAAGGGAGGTAACTTTAAGGTTGCCAGTGGTGGATCCAGctccgttaggctaagttgtctacagctaatgattgtgtctttattctatatccccagcacctaaaacagggtcacacaacattcactaaatgtttgttgaataaaagagtTAACAAACATAATTGAAAGCTTTTTTTCTTCCTATATTTAGCATGAAGACTGTCATTGTTTCTCTAGGAAATGTATGAATCTGAACTTTTTTGACTTGAAGAAAAACATTCTTTTTTTACAGAGATTTGGACTTTGATGATAGGTTTTAAAAATATATGATAAATATTTTTTGTACTTGTTTGATTTTTTTTTTAAAGACTTTACTTCAGAAAGGGAAAGACTGTTTAGAAAGAATGCATATTTTTTCCCTATTTATTTCTGTGGTTACTGCTTTTGCAGTTTAACAGTGTTTGTATTTGATATTTGTATATGTTTGATTGCTATCTTTAAAGTGCCTTATCAGATTTATGGCTCTGTGCTATTACTTTTTGAGCTTTGCAAGTTGTGTACATAATAATTCTAAAGAAGTTACTTTGTTTGCAATGCATCAAATTTAAATGATGTGATTTTTTTTGTATTATTTGATCTTAGTGACAGTGTTCTATTTTGCATCCTGTATCTTATGTTGCTTTTGGTGTTTTGTGTTGTGTGTCAACGATTAAGCCAACTAATTCTCTACCATATATAACTTCTGGACATTTTTGATACAACATCTTAATTCTTTGTAGATATGGAGATAGGTACAGAACTATATTCTAATGCCCCACAATGGGGCTATGAGAGGGGACAGATGGATGGGCAAAGAATAGTTTTGTTTAACATATTAGGTCATAGTTCTTGATTAGTTTTTTTAGTTAAAGATAAACACATAGGGTGTGATTTCTATACCAAAGATATGCTTATTTCAGTATTAGAAAAATATTCTTCTTACATCTCCTGAAAATTGCAATTTTTAAAATGTGTAAAAATAAATTATTATTAAAAGCACATTTTATTTCCATTTGTTTGGATTCATTACCttaaaactttattgacatatttcaaagatataggaaaggtaaatgatttcaagaaaatccgtgtatttctaccatgcagatgtaataaatgttagcatttggctatattttcttcagacacacatatgcatgtaattgcaaatgttagatacatttgaagtttgctttgttacctgtttgatcctgtcccgttcctccctccccagagtccccagaggtaaccactagagggggcataatatagcatgtgtttttatatttttaatacaaatatattttttaaaagcgctacaaaatattgttttatatAtgtggtagccagcttccagatggccccagtgatccctggcctcctggtgttcatgccccagtatagccttctcctgcattttacagtgctgacttttgtaactaccaggatattgagcaaatgcagtgtgtgatttctgaggcCATATCttttactcttttttttttttttaagagacaagatctcactctattgctcaggctggagtgtggtggcaggatcatagctcactgtaaccttaaacttggactcaaacaatcctcccatctcgcctcctcctataaagcactgggattacaggcATTTTTGCTCATTTTTCTATGTTGTTTTTTTTACTTGTCAGTTTTTAGATATTACATATTTTGAATACTAATGATCTGTTATGTATGTTCCAATTATCTTTTTTAGTCTGGTTTGTCTTCATATTTTGGTTATGAAATCTTGAATTTTTAAAAACGTAATTTTACCAATCTTTCATAATGATTTGCTTTTTCTGGTTTTTGTATAGGAaatgtcataaaaatagtcctattcagccttccaaaagttacaaaatttttgtttttaacatttagatgtttagtccaactgaaatttgttttcttttatggcatgattttggaatcttgttttaattatttttacatatttatagctgttcctccaagtatcaatttttcaaGTGCAACATCTGTCATGCAGTTACTATGTAAGGGCCAGATTCTGACCTTTCTGTTCTTTTTATCtgaaggaaatttgaacatgccacccccaaatatgccgatttggcatactgattatttcgagctaaaggtgcttgactaacagtagttgcagaaatggctattttaactgtcctttcctacctgtagcaagccatacaaacttctttgataaagatgctttcctgataccaagatgagaagatggctctaatcagctgagacagcaccagaggaatctacaaacaagaaactattagtttcttaacatatatttaccttccacagtttctgcctctggaagcctaaaactgctttccttcgtcttgtcacacttctctgaaatgtattctttgtggaagatgctatatagtccagagttgtaagccactacttgtgtttaccttttcattgagttttctcctgtgtgatgtacgttgcatatattaataaaattacttgtttttctcttgttaa

Publications

PMID - Link Title