Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name FXNP2
Plot displaying the genomic locations of a retrocopy (in chr9) and its respective parental gene (in chr9). Each line represents a retrocopy.
Species Pan troglodytes
Coordinates chr9:97232261-97234463  UCSC
Strand -
Parental Sequence XM_016960930.1
Parental seq. overlap 1706 bp
Parental seq. overlap (%) 23.3%
Genomic Region Intragenic (SCAI)
Retrocopy Summary FXNP2, located on chr9:97232261-97234463, is a retrocopy of the parental gene FXN. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name FXN
Full Name frataxin
Also known as -
Coordinate chr9:57441963-57505485
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens FXNP2
Bonobo Pan paniscus FXNP2
Gorilla Gorilla gorilla FXNP2
Orangutan Pongo abelii FXNP2
Gibbon Nomascus leucogenys LOC115834064P1
Green monkey Chlorocebus sabaeus FXNP2
Crab-eating macaque Macaca fascicularis FXNP4
Rhesus Macaca mulatta FXNP4
Baboon Papio anubis FXNP4
Golden snub-nosed monkey Rhinopithecus roxellana FXNP3
Marmoset Callithrix jacchus FXNP1
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>FXNP2
CGGCCAGCAGAATTGGCCCCGCTCTGTGGCTGCCGGGGCCTGCGCACTGGAATCGCCGTGGCCTGCGCACCCCACCATGCCAGTTTGAACCTCCATGGCCTCAACCAGATTCGGAATGTCAAAAAGCAGAGTGTCTATTTGATGAATTTGAGGAAATCGGGAACTTTGGGCCACCCAGGCTCTGTAGATGAGACCACCTATGAAAGACTAGCGGAGGAATCACTGGACTCTTTAGCAGAGTTTTTTGAAGACCTTGCAGACAAGCCATACACGTTTGAGGACTATGATGTTTCCTTTGGGAGTGGTGTCTTAACTGGTAAACTGGGTGGAGATCTAGCAACCTACGTGATCAACAAGCAGACACCAAACAAGCAAATCTGGTTATCTTCTCCATCCAGTGGACTCAAGCGTTATGACTGGACTGAGAAAAACTGGGTGTACTCCCACGATAGCGTGTCCCTCCATGATGTGCTCGCTGCAGAGCTCACTAAAGCCTTAAAAACCAAACTGGACTTGTCTTCCTTGGCCTATTCTGGAGAAGACGCTTGATGCCCAGCCCAGTTTTAAGGATATTAAAAGCTGTCAGGCCAAGACCCCAGCTTCATTATGCAGCTGAGGTCTGtCATTCCTGCTTTTGAGGAACAGCTCTGTGGAAAGAACGTGTTGCCTCCTACCTTGCCCACAAGTTTTAATTTTTAATTTCTACAGAAGATTTTTTTGGATTGTCTGATTTCCTCCCTCATATGATATCCTTTATCTTTTATAATGTCTTATCCCTATACCTGAATATAACAACCTTTAAAAAAGCAAAAGAATAAGAAGGAAAAATTCCAGCAGGAGAAATGAATTGTCTTCACTCTTCATTCTTTGAAGGACTTACTGCAAGAAATACATGAAGAGCAACTGGTTAACCTGCTCACTGTTCTGTCTCAAAATGAGACACATTAACGGGTAGGCTACAATGTTCCTGGGCTTCTTTCAAAGTGGAAGCACTTCTGAGCTCTTTAGCATTGAAGTGTCAAAAGCAATTCACATGGGAAGACAATTTCTTATATGTGCTTTGTGACTGCCAGGGTGTGGCCTGCACTGGGTTGTCCTGGGAGACCTAGTGCTGTTTCTTCCACATATTCACATTTTTTTATTATTTTTTCATTTTAAGGGTTAGTATGGAATCAGCTGCTACAAGAATGCAAAAAACTTCCAATGACAAGAAAGGAGGAAAAAAAAGCCATTTTCATGAGCTGAGTGATGTAGCATAATAAACAAAATCATGGAGCTGAGGAGGTGCTTTGTAAACGTGAAGGGGCATAAAAAGCATTCAGTGGTCCTGTCAAGCAGCCTAACAGGCTAGCTCTAATTCCCGTTGGGTAGATGAGGGGATGACAAAGAACAATTTGTAAGCTATATAGGAAACATTGTTATTGGTGTTGCCCTATCAGGATTTCAGTTGAATTCATGTTAAAATTACAGCCGTCCTTTATTGTACACTTATTGGGTTAAGCCGATTATACCATATTACCTCATTTTAATTTTTACTGACCTGCACTTTATACATGAAGCAACAAGGCTCCAGGACATTAAAACTCACACAAAGTTATGCTCATGTTATATTATTTTCTTACTTAAAGAAGGATTTATTAGTGACAAGTTTGTATTAATATGTAGCAAAGGCTTTTCCAATGGGTGAATAAAAACACATTCCATTATAGTCTCTTAATAATGAAACAGTATAAACAGAAGCTAAGTAAAATATTTTCTTTCTCCTGAAATAAAATTATTTTTTGAGTCTGATGGAAGTGTTTAAGTGCAGTAGGTCAGTGCCAGTGAGAAAAAAGATAAAATCATACAA
>XM_016960930.1
ACCCAACTGCTGTAAACCCATACCGGCGGCCAAGCAGCCTCAATTTGTGCATGCACCCACTTCCCAGCAAGACAGCAGCTCCCAAGTTCCTCCTGTTTAGAATTTTAGAAGCGGCGGGCCACCAGGCTGCAGTCTCCCTTGGGTCAGGGGTCCTGGTTGCACTCCGTGCTTTGCACAAAGCAGGCTCTCCATTTTTGTTAAATGCACGAATAGTGCTAAGCTGGGAAGTTCTTCCTGAGGTCTAACCTCTAGCTGCTCCCCCACAGAAGAGTGCCTGCGGCCAGTGGCCACCAGGGGTCGCCGCAGCACCCCGCGCTGCAGGGCGGAGCGGGCGGCAGACCCGGAGCAGCATGTGGACTCTCGGGCGCCGCGCAGTAGCCGGCCTCCTGGCGTCCCCCAGCCCGGCCCAGGCCCAGACCCTCACCCGGGTCCCACGGCCGGCAGAGTTGGCCCCACTCTGCGGCCGCCGGAGCCTGCGCACCGGCATCGATGCGACCTGCACGCCCCGCCGCGCAAGTTCGAACCTCCGTGGCCTCAACCAGATTTGGAATGTCAAAAAGCAGAGTGTCTATTTGATGAATTTGAGGAAATCCGGAACTTTGGGCCACCCAGGCTCTCTAGATGAGACCACCTATGAAAGACTAGCAGAGGAAACGCTGGACTCTTTAGCAGAGTTTTTTGAAGACCTTGCAGACAAGCCATACACGTTTGAGGACTATGATGTTTCCTTTGGGAGTGGTGTCTTAACTGTTAAACTGGGTGGAGATCTAGGAACCTACGTGATCAACAAGCAGACGCCAAACAAGCAAATCTGGCTATCTTCTCCATCCAGGTATGTAGTGGACCTAAGCGTTATGACTGGACTGGGAAAAACTGGGTGTACTCCCACGACGGCGTGTCCCTCCATGAGCTGCTGGCCGCAGAGCTCACTAAAGCCTTAAAAACCAAACTGGACTTGTCTTCCTTGGCCTATTCCGGAAAAGATGCTTGATGCCCAGCCCCGTTTTAAGGACATTAAAAGCTATCAGGCCAAGACCCCAGCTTCATTATGCAGCTGAGGTCtgttttttgttgttgttgttgttgttTATTTTTTTTATTCCTGCTTTTGAGGACAGTTGGGCTATGTGTCACAGCTCTGTAGAAAGAATGTGTTGCCTCCTACCTTGCCCCCAAGTTCTGATTTTTAATTTCTATGGAAGATTTTTTGGATTGTCGGATTTCCTCCCTCACATGATATCCCTTATCTTTTATAATGTCTTATGCCTATACCTGAATATAACAACCTTTAAAAAAGCAAAATAATAAGAAGGAAAAATTCCAGGAGGAAAAATGAATTGTCTTCACTCTTCATTCTTTGAAAGATTTACTGCAAGAAGTACATGAAGAGCAGCTGGTCAACCTGCTCACTGTTCTGTCTCCAAATGAGACACATTAAAGGGTAGCCTACAAATGTTTTCAGGCTTCTTTCAAAGTGTAAGCACTTCTGAGCTCTTTAGCATTGAAGTGTCGAAAGCAACTCACACGGGAAGACCATTTCTTATTTGTGCTCTGTGACTGCCAAGGTGTGGCCTGCACTGGGTTGTCCAGGGAGACCTAGTGCTGTTTCTCCCACATATTCACATATGTGTCTGTGTGTATATATATTTTTTCAATTTAAAGGTTAATATGGAATCAGCTGCTACAAGAATGCAAAAAATCTTCCAAAGACAAGAAAAGAGGAAAAAAAGCCGTTTTCATGAGCTGAGTGATGTAGCGTAACAAACAAAATCATGGAGCTGAGGAGGTGCCTTGTAAACATGAAGGGGCAGATAAAGGAAGGAGATACTCATGTTGATAAAGAgagccctggtcctagacatagttcagccacaaagtagttgtccctttgtggacaagtttcccaaattccctggacctctgcttccccatctgttaaatgagagaatagagtatggttgattcccagcattcagtggtcctgtcaagcaacctaacaggctagttctaattcCCTTTGGGTAGATGAGGGGATGACAAAGAACAGTTTTTAAGCTATATAGGAAACATTGTTATTGGTGTTGCCCTATCGTGATTTCAGTTGAATTCATGTGAAAATAATAGCCATCCTTggcctggcgcggtggctcacacctgtaatcccagcacttttggaggccaaggtgggtggatcacctgaggtcaggagttcaagaccagcctggccaacatgatgaaaccccgtctctactaaaaatacaaaaaattagccgggcatgatggcaggtgcctgtaatcccagctactcgggaggctgaggcagaagaatcgcttgaacccagaggtggaggttgcagtgagccgagatcgtgccattgcactgtaacctgggtgactgagcgaaactctgtctcaaaataataataacaataaaaTAATAATAATAGCCATCCTTTATTGTACCCTTACTGGGTTAATCGTATTATACCACATTACCTCATTTTAATTTTTACTGACCTGCACTTTATACAAAGCAACAAGCCTCCAGGACATTAAAATTCATGCAAAGTTATGCTCATGTTATATTATTTTCTTTAAGAAGGATTTATTAGTGgctgggcatggtggcgtgcacctgtaatcccaggtactcaggaggctgagacgggagaattgcttgacgccgggcggaggaggttacagtgagtcgagatcgtacctgagcgacagagcgagactccgtctcaaaaaaaaaaaaaaaGGAGGGTTTATTAATGAGAAGTTTGTATTAATATGTAGCAAAGGCTTTTCCAATGGGTGAATAAAAACACATTCCATTAAGTCAAgctgggagcagtggcatatacctatagtcccagctgcacaggaggctgagacaggaggattgcttgaagccaggaattggagatcagcctgggcaacatagcaagatcctatctcttaaaaaaagaaaaaaaAAACCTATTAATAATAAAACAGTATAAACAAAAGCTAAATAGGTAAAATATTTTTTCTGAAATAAAATTATGTTTTGAGTCTGATGGAAATGTTTAAGTGCAGTAGGCCAGTGCCAGTGAGAAAATAAATAACATCATACATGTTTGTATGTGTTTGCATCTTGCTTCTACTGAAAGTTTCAGTGcaccccacttacttagaactcggtaacatgatgtactcctttatctgggacacagcacaaaagaggtatgcagtggggctgctctgacatgaaagtggaagttaaggaatctgggctcttatggggtccttgtgggccagcccttcaggcctattttactttcattttacatatagctctaattggtttgattatctcgttcccaagGCAGTGGGAGATCCCCATTTAAGGAAAGAAAAGGggcctggcacagtggctcatgcctgtaatcccagcactttgggaggctgaggcgagtggatcacctgaggtcaggagttcaagaccagcctggccaacatggcaaaatcccatctctactaaaaatattaaaaaattggctgggcatggtggttcgtgcctataatttcagctactcaggaggctgaggcaggagaatcgctgtaacctggggggtggaggttgcagtgagacgagatcatgccacttcactccagcctggccaacagagccgtactccgtctcaaataaataaataaataaataaataaaGGGACTTCAAACACATGAACAGCAGCCAGGGGAAGAATCAAAATCATATTCTGACAAGCAAACTGGAAAAGTACCACtgtgtggaccaatagcctccccactgcagaccctgggagcatcgcctcatttatggtgtggtccagtcatccatgtgaaggatgagtttccaggaaaaggttattaaatattcactgtaacatactggaggaggtgaggaattgcataatacaatcttagaaaACttctttttcccctttctattttttgagacaggatctcactttgtcactcaggctggaggacggtggtacaatcaaagctcatggcagcctcgacctccctgggcttgggcaatcctcccacaggtgtgcacctccatagctggctaatttgtgtattttttgtagagatggggtttcgccatgttgcccaggctggtctctaacacttgggctcaagtgatccacctgcctcgtcctcccaagatgctgggattacaggtgtgtgccacAGGTGTTCATCAGAAAGCTTTTTCTATTATTTTTACCTTCTTGAGTGGGTAGACCCTCAGCCACATAGAAAATAAAATGTTCTGGCATGACTTATTTAGCTCTCTGGAATTAcaaagaagcaatgaggtgtgtaaaagagaacctggatttttgaatcacaaatttagaatttaatcgaaactctgcctcttacttgtttgtagacactgacagtggcctcatgtttttttttttttttaaatctataaaatggagataTCTAACATGTTGAGCCTGGGCCCACAGGCAAAGCACAATCCTGATGTGAGAAGTACTCAGTTCACGACAACTATTGTTTTCACATGCATAGCATAATTTCATATTCACATTGGAGGACTTCCCCCAAAATATGGATGACGTTCCCTACTCAACCTTGAACTTAATCAAAATACTCAGTTTACTTAACTTCGTATTAGATTCTGATTCCCTGGAACCATTTATCGTGTGCCTTACCATGCTTATATTTTACTTGATCTTTTGCATACCTTCTAAAACTATTTTAGCCAATTTAAAATTTGACAGTTTGCATTAAATTATAGGTTTACAATATGCTTTATCCAGCTATACCTGCCCCAAATTCTGACAGATGCTTTTGCCACCTCTAAAGGAAGACCCATGTTCATAGTGATGGAGTTTGTGTGGACTAACCATGCAAGGTTGCCAAGGAAAAATCGCTTTACGCTTCCAAGGTACACACTCAGATGAAAGTAATTTTAGTCCGTGTCCAGTTGGATCCTTGGCACATAGTTATCTTCTGCTAGAACAAACTAAAACAGCTACATGCCAGCAAGGGAGAAAGGGGAAGGAGGGGCAAAGTTTTGAAATTTCATGTAAATTTATGGTGTTCAAAACGACGAGTTCATGACTTTGTGTATAGAGTAAGAAATGCCttttcttttttgagacagagtcttgctctgtcacccaggatggagtgcagtggcacgatctgggctcactacaacctccgcctcctgggttcaagcaattctctgcctcagcctcccgagtagctgggattacaggtgcctgccaccacacccggctaatttttgtatttttagtagagacggggtttcaccatcatggccaggctggtcttgaactcctgacctagtaatccacctgcctcggcctcccaaagtgctgggattacaggtgtgagccactgcagccagccAGAAATGCCTTCTAATCTTTGGTTTATCTTAATTAGCCAGGACACTTGGAGTGCATCCCGAAGTACCTGATCAGTGGCCCCTTTGGAATGTGTAAAACTCAGCTCACTTATATCCCTGCATCCGCTACAGAGACAGAATCCAAGCTCATATATTCCATCTTCTCTGGCTGTATAGTTTAAGGAATGGAAGGCACCAGAACAGATTTATTGAAATGTTTATTAGCTGAAGATTTATTTAGACAGTTGAGGAAAACATCGGCACCCAGCAGTAAAATTGGCTCTCAAAGATTTTCTTCTCCTGTGGAAAGTCAGACCTCTGAGGCCCCATCCAGGTAGAAGTACTAGTGCAAGAAGGGCCTCTGCTGTCCACTTGTGTTTCTGTGATCTGTGGGAACATTGTTAAAGCCACATCTTGACCTCAAATTGTTTAGCTCCTggccagacacggtggctcacacctgtaatcccagcactttgagaggctgaggcaggtggatcacctgaggttaggagttcgaggccagcctggtcaacatggtaaaaccccacctctactaaaaatacaaaaattagctgggcgtagtggcgcacgcctgttatcccagctactcgggaggctgaggcgggagaattgcttgaacctgggtggtggaggttgcagtgagccgagattacaccactgcactccagcctgggcgacaagagggaaactccattaaaaaaaTGTAATTCCCGTGTCTGCCATCTTAAGTGTAAAGGTGGCTAAATTATATAGAAAAATAAGACAATATCATTTCCCAATTACATTCCTTTCCTACCGCACTCTATGATGCTAGCTGAGATTTTTCCAAAAGAAAATGGCTTAAATAAAACCCTAAGAGAAAGAAAAACTTTAAATCCCTCCAAAGCTCAAAAGTAATAGAAACAGATGAGTTTGGAGTcaggatttctgtgtaagattgcctaggctgtgtactgcacatctccaggtgccaccgttcacagagattataactacaatgtgaagtgaatggtgccactgacagttatgcaAACCGTCCAGAGCATAGCCACCTGATCCTGCTGGGATTCCTCTTGccagtccatcagcagttccccttgaaagtttcaccaaacatcccttaaatctgccctctcctgcccatccccagtggaggtactcatcatttttcacctgcatttttgcaggagctttcttatatccaccttcctccttttctctcagcccatcatctatctacacagtctccagggtaagctttCAGAAAGGCAATCTCTTGTCTGTAAAACCTAAGCAGGACCAAGGCCAAGTTTCTTAGCCTGAAAAATGTGCTTTTCTGACTGAACTGTTCAGGCACTGACTCTACATATAATTATGCTTTTCTACCCCCTCACACTCAACACTTTGACTCCAACAATCCCAAATCCCCAGATCCCTAAGTGTGCTGTGCTATTTCACATGGCTCTCAGACTTGGCCAGTGCTGTTTCCATTTTGGTCTTTATTCCCCACATCTCTGCCTGGGGGGTAGATTCTACCCTGAAAAATGTTCTTGGCACAGCCTTGCAAACTCCTCCTCCACTCAGCCTCTGCCTGGATGCCCTTGATTGTTCCATGTCCTCAGCATATCATGTTTGTCTTTCCCAGCACTGACCTACCAtgtgtcacccctgcttggctgtaccttccatgaggctaggactatgtgtctcctttgttgactgctgttgccctagcatcttgcacagttccttgcacacaattagagctctataaatgtcaaataaatgTGTTATAATTATATGTTTAAAATAGTTGTTCAAATAAACTCTAAATAACCCCAA

Publications

PMID - Link Title