Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC100611724P7
Plot displaying the genomic locations of a retrocopy (in chr21) and its respective parental gene (in chr9). Each line represents a retrocopy.
Species Pan troglodytes
Coordinates chr21:76501-77400  UCSC
Strand -
Parental Sequence XM_016962301.2
Parental seq. overlap 711 bp
Parental seq. overlap (%) 40.8%
Genomic Region Intergenic
Retrocopy Summary LOC100611724P7, located on chr21:76501-77400, is a retrocopy of the parental gene LOC100611724. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC100611724
Full Name N/A
Also known as -
Coordinate chr9:35094577-35096375
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Gorilla Gorilla gorilla LOC101130248P6
Gibbon Nomascus leucogenys LOC100590160P2
Green monkey Chlorocebus sabaeus LOC103226004P5
Marmoset Callithrix jacchus LOC100400163P1
Cow Bos taurus LOC112442207P3
Panda Ailuropoda melanoleuca SUMO2P10
Cat Felis catus LOC101085512P7
Human Homo sapiens Without Homology
Bonobo Pan paniscus Without Homology
Orangutan Pongo abelii Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC100611724P7
ACATCAGATAATTCATACTGAAGAGAAATCCTACCAATGTGAAGAATATGGCAAAGATTTTAAGCAGTCTTCAGGTCTTACTGTACATGAGAGAATTCATACTAAAGAGAGACCCTACAAGTGTGAAGAATGTGACAAAGCCTTTAAACAATCTTCAAGACTGAATAAACATAAGAAAATTTATACTGGAGATACAACCTACAAATGTGAAGAAAGTGGCAAAGCTTTGAAGTAGTCTTCAAACCTGACTATACATAAGATTATTCATATGGGAGAGAAACCCTACAAATGTGATGAATGTGGCAAAGCCTTTAGAAAATCCTCAAAACTGAAAGAACATAAAAGAATTCATACTTGAGAGAAACCCTATAAATGTGAAGAATGTGGCAAAGCTTTTTACTATTCCTCAGGCCTTACTCAACATAACATAGTTCATACTGGAGACAAACCCTACAAATGTACAGATTGTGGCAAAATTTTTAAGTGGTCTTCGAACCTTACTATACATCAGAGAATTCATAGTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCCTTTAAACAATCCTCAAAACTGAATGAACATATGAGAGCTCATACTGGAGAGAAATTCTACTAATGTGAAGAATGTGACAAAGCTTTTAAGCAACCTTCAGGCCTTACTCTACATAAGAGAATTCATACTGGAGAGAACCCTTACAAATTCAAAGAATGTGGTAAAGCCTTTTATTGGTTTTTAAGCTTTACTAAACATATGATAATTCATAGGGGAAAGAAACCCTACAAATGTCAAGAATGTGGCAAAGCTTTTAAGTGGTCTTCAAACCTTACTATACACAAGAGAATTCATACGGGAGAGAAACCCTGCAAATGTGAAGAATGTGGCAAATCTTG
>XM_016962301.2
CACTGTTCTGCATCCTCTGCTCCTAGAGGCCCATCCTCTGTGGCCCTGTGACCTGCAGGTATTGGAAGATCCACAGCTGAGACACTAGGACCCCCTGGAAGCCTAGAAATGGGAGTGTTGACATTTAGGGATGTGGCCATAGAATTCTCTCTGGAGGAGTGGCATTGTCTGGACACTGCACAGCAGAATTTATATAGGAATGTGATGTTAGAGAACTGCAGAAACCTGGTCTTCCTGGGTATTGCTGCCTCTAAGCCAGACCTGATCACCTGTCTGGAGCAAGGAAAAGAACCTTGGAATGTGAAGAGACATGAGATGGTAGCTGAACCCCCAGTTGTATGTTCTTATTTTGCCCAAGACCTTTGGCCAAACCAGGGCATAAAAAATTGTTTCCAAAAAGTGATACTGAGAAGATATAAAAAATGTGGACATGAAAATTTACAGTTAGGAAAATACCGTAAAAGCATGGATGAGTGTAAGGTGCATGAAGAATGTTGCAATGGACTTAACCAGTGTTCGAGAACTACCCAGAGCAAAATATTACAATGTGACAAATATGTGAAAGTCTTTCATAAATTTTCAAATTCAAACAGATATAAGATAAGACATACTGGAAAGAAATCTTTCAAATGTAAAGAATGCGAAAAGTCATTTTTCATGCTTTCACACTCAGCTCAACATAAAAGAATTCATAGTGGAGAAAAACCCTACAAATGTAAAGAATGTGGGAAAGCCTATAATGAGGCCTCAAACCTTTCTACACATAAAAAAATTCATACTGGAAAGAAACCCTACAAATGCGAAGATTGTGGAAAAGCCTTTAACTGGCTTTCACATCTTACTACACAAAAAATAATTCATACCGGAAAGAAACCCTACAAATGTGAGGACTGTGGCAAAGCTTTTAACCAATCTGCAAACCTTACTACACATAAGAGAATTCATACTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCTTTTAGCCAGTCCTCAACCCTCACTACACATAAGATAATTCATGCTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAATCTTTTAACCAATCCTCCCTCCTTACTACACGTAAGAGAATTCATTCTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCTTTTAAACAATCCTCAACCCTTACTACACATAAGAGAATTCATTCTGGAGAGAAATTCTACAAATGTGAAGTATGTAGCAAAGCCTTTAGCTGGTTCTCACACCTTACTACACATAAGAGAATTCATACTGGAGAGAAGCCCTACAAATGTGAAGAATGTGGCAAAGCTTTTAACCTATCCTCACACCTTACTACACATAAGATAATTCATACTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCTTTTAACCAGTCCTCAACTCTTTCTAAACACAAGGTTATTCATACTGGAGAGAAACCCTACAAATGTGGAGAATGTGGCAAAGCCTTTAACCAGTCCTCACACCTTACTACACATAAGATAATTCATACTGGTGAGAAACCCTACAAGTGCGAAGAATGTGGCAAAGCCTTTAACAACTCCTCTATTCTTAACAGACATAAGATGATTCATACTGGAGAGAAACTCTACAAACTTGAAAGTTGTAACAATGCTTGTGACAACATCTCAAACATTTCCAAACATAAAAGAAATTGTGCTGGTGAGAAAACATAG

Publications

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