Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC100400163P1
Plot displaying the genomic locations of a retrocopy (in chr2) and its respective parental gene (in chr22). Each line represents a retrocopy.
Species Callithrix jacchus
Coordinates chr2:568422-569664  UCSC
Strand -
Parental Sequence XM_017969102.2
Parental seq. overlap 878 bp
Parental seq. overlap (%) 54.3%
Genomic Region Intragenic (LOC103788059)
Retrocopy Summary LOC100400163P1, located on chr2:568422-569664, is a retrocopy of the parental gene LOC100400163. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC100400163
Full Name N/A
Also known as -
Coordinate chr22:20772628-20782280
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens ZNF723P4
Chimpanzee Pan troglodytes LOC100611724P7
Bonobo Pan paniscus LOC103783565P5
Gorilla Gorilla gorilla ZNF66P4
Orangutan Pongo abelii LOC100445959P5
Gibbon Nomascus leucogenys LOC100585566P5
Green monkey Chlorocebus sabaeus LOC103226004P2
Crab-eating macaque Macaca fascicularis LOC102128845P4
Rhesus Macaca mulatta ZNF195P3
Baboon Papio anubis LOC101000404P5
Golden snub-nosed monkey Rhinopithecus roxellana LOC104662636P3
Mouse lemur Microcebus murinus LOC105863290P1
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC100400163P1
TTAACCAATGTTTGACAGCTACCCCAAGCAAAATACTTCTGTGTAATAAATACATGAAAGTCTTCcataaattttcaaattcaaatagACATAAGAAAAGACATACtggaaataaacatttcaaatgtaaagaatgtggcaaatcaTTTTGCATGCTTTCACAACTAACTCAGCATAGAAGAATTCATACTAGAGTGAATTCTTACAAATGTGAAGAGTGTGGAAAAGCCTTTAACCAGTCCTCACAGCTTTCtagacataagataattcataccgAAGAGAAACCCAacagatgtgaagaatgtggcaaagcctttaaacTGGACTCACACCTTTCTTTACATAAAAGAAATCATACTGgaaagaaaccttacaaatgtgaagaatgtggcaaagtcTTTAGTCAGTCCTCACACCTTACTACACAAAAGATACTTCCTAGTGGAGAGAACctctacaaatgtgaagaatgtggaaaaacttTTAAACTATTCTCAAATCTTACTAACAATAAGAGAATTCATGCTGGAAAGAAACCCTACAAATATAAAGAATGTGGCAGAACTTTTAACATATCCTCAAACCTTAATAAACAGGAGAAAATTTACACTGGGGAGAAactctacaaatgtgaagaatgtggcaaaacttTTAACCGATCTTCAAAccttactaaacataagaaaattcatactgcaGAGAaatcctacaaatgtgaagaatgtggcaaagcctttaaccaGTCCTCAACTCTTATTAttcataagataattcatactggagagaaaccctacaaatgtaaacaatgtggcaaagcttttaaccaatCTTCAAAccttactaaacataaaaaaattcatactCCAGAGAAATcctacaaatgtgaaaaatgtggcaaagcttttagccAACCCTCAAACCTAATTAACCATAAGAAAAtttatactggagagaaaccatacAAATGTGAAGAGTGTGGAAAAGCTTTTAATCGATCCTCAACCCTTACTAGACATAAGAaacttcatactggagagaaaccctacaaatgtgaagaatgtggcagagCTTTTACCCAGTCTTCAAACCTTGCTGAACATAAGAAAAtccatacaggagagaaaccctacaaatgcgAAGAATGTGGCAAGGCCTTTAACCGATTCTCAACTCTTActaaacataagagaattcatactggagaaaaaccctataaatgtgaagaatgtggaaaagcttttaA
>XM_017969102.2
ATggatgtggccatagaattctGTCTGGAGGAGTGGCAATGCCTGGACACTGCACAGCACGATTTATATAGGAATGTGATGTTAGAGAATTACAGAAACCTGGTCTTCCTGGACCTGATCACCTGTTTGGAGCAAGGAAAATTACCTTGGAATGTGAAGAGACATGAGATGGTAGCTGAAcccccagctgtATGTTCTTATTTTGTCCAAGACCTTTGGCCAAAGCAGGGCATAAAAAATTGTTTCCAaaatgtgatactgagaagatataaaaaatgtggacataaaaatttgcatttaagaaaattttgtcAAAGCATATTTGAGTGTAAGGTGCGCACAGAATGTGACAATGGACTTAACCAGTTTTTGACAACTACCCAGAGCAAAATATTTCCATGCAACAAATTTGTGAAAGTCTTtcataaattttcaaattcaaaaaGACATAAGATAAGACAAACTGGAAAGAATCCtttcaaatgtaaagaatgtgatAAGTCACTTTGTACACTTTCACAGTTAGCtcaacataagataattcataccggagagaaaccctacaaatgtgaagaatgtggcaaagcttttaaccaaaagaaaaacCTTACTACACATGAGAGAATTCATACtgaagagaaaccctacaaatgtgaggattgtggcaaagcctttaaccaATCCTCAAACCTTACTAtgcataagataattcatactggagagaaactctacaaatgtgaagaatgtggaaaaacctCTTACCAATTTGCACACCTTCCTACACATAAGAGAAATCATACTgtggagaaaccctacaaatgtgaagaatgtggtaaaGCTTTTAACCAGTCCTCAACccttactacacataagaaaattcatacttgagagaaaccctataaatgtgaagactgtggcaaagcttttagccAATCCTCACACCTTAGTACACATAAAATTATTCATAGTGGAGAGAAactctacaaatgtgaagaatgtggcaaggcCTTTAGCGGGTTCTCACATCTTACTAGTCATAAGATAATTCATATGAAAGTAACCCTACAAATGTtaggaatgtggcaaagcttttagtCAATCTCTAaaccttactacacataagagaATTGGTACTGGAAAGAAATCCTACAAATGTGAAGGAAGTGGCACAGCCTTTAGCGAGTCCTCAAATCTTATTAGAACTAAGACAGTTCATAATGGAGAGAAACCCTAAaagtgtgaagaatgtggcaaagccttcaaCGTCCTCAACCCTTAACAGACATAAGAtgattcacactggagagaaactctAGAAACCCTAAAGTTGTGACAATGCTGGTGACAACACCTCAAACAAAAAACTATGCTGGTGAGAAATATGAATAATGTGACAAACCCTTTAAATGGTTGTCACACTTGATTGTAGGTaagatcattctttttttt

Publications

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