Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPS24P15
Plot displaying the genomic locations of a retrocopy (in chr14) and its respective parental gene (in chr10). Each line represents a retrocopy.
Species Pan troglodytes
Coordinates chr14:62142116-62142657  UCSC
Strand -
Parental Sequence XM_003951680.3
Parental seq. overlap 493 bp
Parental seq. overlap (%) 74.5%
Genomic Region Intragenic (STON2)
Retrocopy Summary RPS24P15, located on chr14:62142116-62142657, is a retrocopy of the parental gene RPS24. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPS24
Full Name ribosomal protein S24
Also known as -
Coordinate chr10:73781081-73788023
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPS24P37
Bonobo Pan paniscus RPS24P12
Gorilla Gorilla gorilla RPS24P15
Orangutan Pongo abelii RPS24P16
Gibbon Nomascus leucogenys RPS24P18
Green monkey Chlorocebus sabaeus RPS24P18
Crab-eating macaque Macaca fascicularis RPS24P14
Rhesus Macaca mulatta RPS24P14
Baboon Papio anubis RPS24P12
Golden snub-nosed monkey Rhinopithecus roxellana RPS24P9
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPS24P15
TGTCTGAGGATAGACCACCATCATGAATGACATGGTAACTATCTGAACTAGAAAGTTCATGACCAACCAACGACTTCAGAGGAAACAAATGGTCATTGACGTCCTTCACCCTGGGAAGGCAACAGTACCGTACCTAAGACAGAAATTCGGGAAAAACTAGCAAAAATGTACAAGACCACACTGGATGTCATCTTTGTACTTGGATTCAGAACTCATTTTGGTGGTGGCAAGACAACTGGCTTTGGCATGATTTATGATTTCTTGGATTATGCAAAGAAATATGAATCCAAACATAGACTTGTAAGACATGGTCTGTATGAGAAGAAAAAGAACTCAAGAAAGCAACGAGAGGGACACAAGAACAGAATGAGGAAAGTCAGGGGGACTGCAAAGGCCAAAGTTGGTGTCGCTAAAAAGAAATGAGGTGTCTAGCAGTGAGCTGTGGAGATTGGATCACAGCTGAAGGGGTAAAGGTGTTGCAATGATGTTATCTGTGGCCATTGTGGATTTTTCACAGGAAGATCAATAAACTAAAAACTTT
>XM_003951680.3
TCGGCGCGGTCAGCCTCGTGGCGCGCCCACGCCCCCACGCTGGCTCTTCCCGGGGTCCTTCCGTGCGCGTTGATATGATTGGCCGGCGAATCGTGGTTCTCTTTTCCTCTTTGGCTGTCTGAAGATAGATCGCCATCATGAACGACACTGTAACTATCCGCACTAGAAAGTTCATGACCAACCGACTCCTTCAGAGGAAACAAATGGTCATTGATGTCCTTCACCCCGGGAAGGCAACAGTGCCTAAGACAGAAATTCGGGAAAAACTAGCCAAAATGTACAAGACCACACCGGATGTCATCTTTGTATTTGGATTCAGAACTCATTTTGGTGGTGGCAAGACAACTGGCTTTGGCATGATTTATGATTCCCTGGATTATGCAAAGAAAAATGAACCCAAACATAGACTTGCAAGACATGGCCTGTATGAGAAGAAAAAGACCTCaagaaagcaacgaaaggaacgcaagaacagaatgaagaaagTCAGGGGGACTGCAAAGGCCAATGTTGGTGCTGGCAAAAAGAAATGAAGTGTCTAGCAGtgagctggagattggatcacagCCGAAGGAGTAAAGGTGCTGCAATGATGTTAGCTGTGGCCACTGTGGATTTTTCACAAGAACATTAATAAACTAAAAACTTCATGTG

Publications

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