Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name GSTM4P1
Plot displaying the genomic locations of a retrocopy (in chr6) and its respective parental gene (in chr1). Each line represents a retrocopy.
Species Pan paniscus
Coordinates chr6:108848490-108849618  UCSC
Strand -
Parental Sequence XM_034960048.1
Parental seq. overlap 1007 bp
Parental seq. overlap (%) 70.5%
Genomic Region Intergenic
Retrocopy Summary GSTM4P1, located on chr6:108848490-108849618, is a retrocopy of the parental gene GSTM4. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name GSTM4
Full Name N/A
Also known as -
Coordinate chr1:112033462-112337606
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens GSTM2P1
Chimpanzee Pan troglodytes GSTM1P1
Gorilla Gorilla gorilla GSTM1P1
Orangutan Pongo abelii LOC100453622P1
Gibbon Nomascus leucogenys GSTM1P1
Green monkey Chlorocebus sabaeus LOC103224273P2
Crab-eating macaque Macaca fascicularis GSTM4P1
Rhesus Macaca mulatta GSTM4P1
Baboon Papio anubis GSTM4P1
Golden snub-nosed monkey Rhinopithecus roxellana LOC104656061P1
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>GSTM4P1
GGCCTTTCTGCACAATCCACACTGACCAGCACCATGCCCGTGACACTGGGGTACTGGGACATCTGAGGGCTGGCCCACGCCGTCTGCCTGCTCCTGCAATACACAGACTTAAGCTATGAGGAAAAGAAGTACATGATGGGGTACGCTCCTGACTATGACAGAAGCCAGTGGCTGAATGAAAAATTCAAGCTGGGCCTGGACTTTCCCAATCTGCCCTACTTGATTGATGGGGCTCACAAGATCACCCAGAGCAAGGCCATCCTGGGCTGCATTGCCTACAAGCACAATCTGTGTGGGGAGACAGAAGGGGAGAAGATTTGGGAAGACATTTTGGAGAACCAGCTTGTGGACAACCACGTGCAGCTGGCCAGACTCTGCTACAACCCAGATTTTAAGAAACTGAAGCCAGAATACCTGGAGGCACTCCCTGCAATGCTGAAGCTCTACTCACAGTTTCTGGGGAAGCAGCCATGGTTTCTTGGGGACAAGATCACACTTGTGGATTTCATCGCGTATGGTGTCCTTGAGAGAAACCAAGTATTTGAGCCCAAGTGGTTGGACGCCTTCCCAAACCTGAAGGACTTCATCTCCCGATTTGAGGGCTTGGAGATCTCTGCCTACATGAAATCCAGCTGCTTCCTCCCGAGACCTGTGTTCACAAAGATGGCTGTCTGGGGCAACAAGTAGTGCCTTGAAGGCCAGGAGGTGGGAGTGAGTTGCCCATACTCAGCCTGTTGCCCAGGCTGTGGAGAGCAGCTGGACTCTACACCCCAGCACCTGCCTTCTTGTTCCTTTCTCCTGTTTATTCCCTTCTTTACCCCCAAGACTTTATTGGCCTTCTTCAATTCCCCTAAACCCGTGTCCCATCCAAGCCCTTTAAAGCCTCAGCTACCCATTTTCCTTCATGAACGTCTCCCTCCCAACATTACCCTTCCCTGCACTAAAGCCAGCCTGACCTTCCTTCCTGTTAGTGGTTGTGTCTGCTTTGAGGGGCCTAACTGGCCCCTTGCCTGTGGAGCTCAGCCCTGAGGTCCCAGGGCTGCATGAAAGAGCAGTACTGACTGGTTTACAGGCCCTTCTCCTGCAGCATGGCCCCTGCCTTAAGCCTACCTGATCCAAGTAAAGCCTA
>XM_034960048.1
ggaagctggcgaggccgagCCCCACCTAGTGCTTCCGGACCTTGCTCCCTGAACACTCGGAGGTGGCGGTGGATCTTACTCCTTTCAGCCAGTGAGGATCCAGCGAGCTGCTCCGTGCCTCCCGCGCCTGTTGGTTGGAAGTGACGACCTTGAAGATCGGCCGGTTGGAAGTGACGACCTTGAAGATCGGCGGGCGCAGCGGGGCCGAGGGGGCGGGTCTGGCGCTAGGTCCAGCCCCTGCGTGCCGGGAACCCCAGAGGAGGTCGCAGTTCAGCCCAGCTGAGGCCTGTCTGCAGAATCGACACCAACCAGCATCATGTCCATGACACTGGGGTACTGGGACATCCGCGGGCTGGCCCACGCCATCCGCCTGCTCCTGGAATACACAGACTCAAGCTACGAGGAAAAGAAGTACACGATGGGGGACGCTCCTGACTATGACAGAAGCCAGTGGCTGAATGAAAAATTCAAGCTGGGCCTGGACTTTCCCAATCTGCCCTACTTGATTGATGGGGCTCACAAGATCACCCAGAGCAACGCCATCCTGCGCTACATTGCCCGCAAGCACAACCTGTGTGGGGAGACAGAAGAGGAGAAGATTCGTGTGGACATTTTGGAGAATCAGGCTATGGACGTCTCCAATCAGCTGGCCAGAGTCTGCTACAGCCCTGACTTTGAGAAACTGAAGCCAGAATACTTGGAGGAACTTCCTACAATGATGCAGCACTTCTCACAGTTCCTGGGGAAGAGGCCATGGTTTGTTGGAGACAAGATCACCTTTGTAGATTTCCTCGCCTATGATGTCCTTGACCTCCACCGTATATTTGAGCCCAAGTGCTTGGACGCCTTTCCAAATCTGAAGGACTTCATCTCCCGCTTTGAGGGCTTGGAGAAGATCTCTGCCTACATGAAGTCCAGCCGCTTCCTCCCAAGACCTGTGTTCACAAAGATGGCTGTCTGGGGCAACAAGTAATGCCTTGAAGGCCAGGAGGTGGGAGTGAGAGCCCATACTCAGCCTGCTGCCCAGGCTGTGCAGCGCAGCTGGACTCTGCATCCCAGCACCTGCCTTCTCGTTCCTTTCTCCTGTTTATTCCCATCTTTACTCCCAAGACTTCATTGTCCCTCTTCACTTCCCCTAAACCCCTGTCCTATGCAGGCCCTTTGAAGCCTCAGCTACCCACTATCCTTCGTGAACATCCCCTCCCATCATTACCCTTCCCTGCACTTTAGTAAAGCCAGCCTGACCTTCCTTCCTGTTAGTGGTTCTGTCTGCTTTGAAGGGCCTGCCTGGCCCCTCGCCTGTGGAGCTCAGCCCCGAGCTGTCCCCGTGTTGCATGAAGGAGCAGCATTGACTGGTTTACAGGCCCTGCTCCTGCAGCATGGTCCCTGCCTTAGGCCTACCTGATGGAAGTAAAGCCTCAACCACA

Publications

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