Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Retrocopy Name LOC100582858P1
Plot displaying the genomic locations of a retrocopy (in chr20) and its respective parental gene (in chrX). Each line represents a retrocopy.
Species Nomascus leucogenys
Coordinates chr20:25984356-25985415  UCSC
Strand -
Parental Sequence XM_003271829.2
Parental seq. overlap 854 bp
Parental seq. overlap (%) 30.5%
Genomic Region Intergenic
Retrocopy Summary LOC100582858P1, located on chr20:25984356-25985415, is a retrocopy of the parental gene LOC100582858. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC100582858
Full Name N/A
Also known as LOC100582858
Coordinate chrX:134844785-134879256
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens TMEM185AP1
Chimpanzee Pan troglodytes TMEM185AP1
Bonobo Pan paniscus TMEM185AP1
Gorilla Gorilla gorilla TMEM185AP1
Orangutan Pongo abelii TMEM185AP1
Green monkey Chlorocebus sabaeus TMEM185AP1
Crab-eating macaque Macaca fascicularis TMEM185AP1
Baboon Papio anubis LOC101012141P1
Golden snub-nosed monkey Rhinopithecus roxellana TMEM185AP1
Marmoset Callithrix jacchus TMEM185AP1
Mouse lemur Microcebus murinus LOC105857525P1
Mouse Mus musculus Tmem185aP1
Rat Rattus norvegicus Tmem185aP1
Chinese hamster Cricetulus griseus Tmem185a_1P1
Rabbit Oryctolagus cuniculus TMEM185AP1
Pig Sus scrofa TMEM185AP1
Cow Bos taurus TMEM185AP1
Sheep Ovis aries TMEM185AP1
Dolphin Tursiops truncatus TMEM185AP1
Horse Equus caballus TMEM185AP1
Dog Canis familiaris TMEM185AP1
Panda Ailuropoda melanoleuca TMEM185AP1
Cat Felis catus TMEM185AP1
Pale spear-nosed bat Phyllostomus discolor TMEM185AP1
Velvety free-tailed bat Molossus molossus TMEM185AP1
Greater mouse-eared bat Myotis myotis TMEM185AP1
Kuhl's pipistrelle Pipistrellus kuhlii TMEM185AP1
Greater horseshoe bat Rhinolophus ferrumequinum TMEM185AP1
Egyptian rousette Rousettus aegyptiacus TMEM185AP1
Sloth Choloepus didactylus TMEM185AP1
Rhesus Macaca mulatta Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC100582858P1
CTCCGCCATGAACCCCAGGGGCCTGTTCCAGGACTTCAACCCTAGTAAGTTTCTCATCTATACCTGCCTGCTGCTCTTCTCGGTGCTGCTGCCCCTCCGCCTGGACGGCATCATCCAATGGAGCTACTGGGCCGTCTTTGCCCCTATATGGCTGTGGAAGCTTCTAGTCGTCGCAGGCGCCTCCGTGGGCGCGGGCGTTTGGGCCCGCAACCCTCGCTACCGCACCGAGGGAGAGGCCTGTGTGGAGTTCAAAGCCATGCTGATCGCTGTGGGCATCCACCTGCTGCTGCTCATGTTCGAAGTCCTGGTCTGCGACAGGGTGGAGAGGGGCACCCACTTCTGGCTGCTGGTCTTCATGCCTCTCTTCTTCGTGTCCCCCGTGTCCGTGGCTGCCTGCGTCTGGGGCTTTCGACACGATAGGTCGCTGGAGCTGGAGATCCTGTGCTCGGTCAACATCCTGCAGTTCATCTTCATCGCCCTAAAGCTGGACAGGATTATTCACTGGCCGTGGCTGGTGGTGTTTGTGCCCCTGTGGATCCTCATGTCGTTCCTTTGCCTGGTCGTCCTCTATTACATCGTCTGGTCCCTCCTGTTCCTGCGGTCCCTGGATGTGGTTGCCGAGCAGCGAAGAACACACGTGACCATGGCTATCAGTTGGATAACGATTGTCGTGCCTCTGCTCACTTTTGAGGTCCTGCTGGTTCACAGATTGGATGGCCACAATACATTCTCCTACGTCTCCGTATTTGTCCCCCTTTGGCTTTCCTTACTAACTTTAATGGCCACAACATTTAGGCGAAAGGGGGGCAATCATTGGTGGTTTGGCATTCGCAGAGACTTCTGTCAGTTTCTGCTtgaaattttcccatttttaagagAATATGGGAACATTTCATATGATCTCCATCACGAAGATAGTGAAGATACTGAAGAAACATCAGTTCCAGAAGCTCCGAAAATTGCTCCAATATTTGGAAAGAAGGCCAGAGTAGTTATAACCCAGAGCCCTGGGAAATACGTTCCCCCGCCTCCCAAGTTAAATATTGATATGCCAGATTAA
>XM_003271829.2
CCGGTCGCGTGCGGACACAAGGATGGCGGCCTCTCAGCGAGGAGCGCTCTGGGCGGGGCTCCGGACGCATGCGCGGCCGCCGTACGGAAGCCCGGAAGGAGGGGCAGGGGGCGGTGGCTCAGGTTTctccgggcggcggcggcggcgacggcgACGGCGGCGACGGCAGCGGGGACGGCAGCAGTAGCGGGAGCAGCAGCGTGGACGCGGCTGGCGCTGGCGCCATGAACCCGCTGTAAGGCGCAGGCTGTGCAGCACGGGGTgcgggggaggaggagaaggacgCCGCGGTGAAGTTCTCCGCCATGAACCTGAGGGGCCTCTTCCAGGACTTCAACCCGAGTAAATTCCTCATCTATGCCTGTCTGCTGCTGTTCTCTGTGCTGCTGGCCCTTCGTTTGGATGGCATCATACAGTGGAGTTACTGGGCTGTCTTTGCTCCAATATGGCTGTGGAAGTTAATGGTCATTGTTGGAGCCTCAGTTGGAACTGGAGTCTGGGCACGAAATCCTCAATATCGAGCAGAAGGAGAAACGTGTGTGGAGTTTAAAGCCATGTTGATTGCAGTGGGCATCCACTTGCTCTTGTTGATGTTTGAAGTTCTGGTCTGTGACAGAATCGAGAGAGGAAGCCATTTCTGGCTCCTGGTCTTCATGCCGCTGTTCTTTGTTTCCCCGGTGTCTGTTGCAGCTTGCGTTTGGGGCTTTCGACATGACAGGTCACTAGAGtTAGAAATCCTGTGTTCTGTCAACATTCTCCAGTTTATATTCATTGCCTTAAGACTGGACAAGATCATCCACTGGCCCTGGCTTGTTGTGTGTGTCCCGCTGTGGATTCTCATGTCCTTTCTGTGCCTGGTGGTCCTCTACTACATTGTGTGGTCCGTCTTGTTCTTGCGCTCTATGGATGTGATTGCGGAGCAGCGCAGGACACATATAACCATGGCCCTGAGCTGGATGACCATCGTCGTGCCCCTTCTTACATTTGAGATTCTGCTGGTTCACAAACTGGATGGCCACAACGCCTTCTCCTGCATCCCGATCTTTGTCCCCCTTTGGCTCTCGTTGATCACGCTGATGGCAACCACATTTGGACAGAAGGGAGGAAACCACTgGTGGTTTGGTATCCGCAAAGATTTCTGTCAGTTTCTGCTTGAAATCTTCCCATTTCTACGAGAATATGGAAACATTTCCTATGATCTCCACCATGAAGATAATGAAGAAACCGAAGAGACCCCAGTTCCGGAGCCTCCTAAAATCGCACCCATGTTTCGAAAGAAGGCCAGGGTGGTCATTACCCAGAGCCCTGGGAAGTATGTGCTCCCACCTCCCAAATTAAATATCGAAATGCCAGATTAGATGCCACTTCCCGGGACAGAGCTTAAGTGGACTGGGACGCgctctctctgcctgcctctgccccgTCGTTCACCCCGCAGACCAGAACCAGTACTGGAGCTGGGTCTCCAGGTACGTCCATCTCATGCCTTGTTTGCATCCAGCGCCTATCAGCCACTCACCACGACGGGACGCGGAAGTGGCAGGTGATGGGGGTGTGTGCCAGCAGATGCGGATGCCAGGAAGAGTATGAGAACGGGTGGGATTTCCATCTGTCTGGGAGGAGCTCCAGGTACCCCTCTTCCCCATCAGACCCACTGGGGGATGCCTGCTTGCCAGGCCCCCAGAAGGAACATCTGTCTACACGGTGCTGaaatctcaatcaaaagtgttGTTTCGAAATGTATTTCTCCACAGGGCTGACCTCCTGCAGCTCCCTCAGCACTCCCAGGTCCTCAGCACTCCCAGGTCGCGGCTGGGGCAGTCAGTAGGAACTGTAACTATGTCTCTGATGCACCACGTGTTTAGACACAGCACAGTCCTTTTTTCTGTTCCTACTGTGGAAGTAGTTTCTCTTTGGGCATGCTGACAGCAGTTTTTCATAGCCTCACCGATGAGCCCTTTCTACGGGAGTGACTCCATGCCTGTATACAGAGTATTTATACAAATGTTTTAGCATCTTCATATGCGGTGTTAACCCCTAGTTCTGTACAGCATATTCTGTTCAAGTATTTTTTTACAAGCTTGTGCTGTAGCCACATGCCTTCTGCTGCAGAAGTGGATGCCCGTGGCACACCCACCCCGCCCCAGTGGGGTGCCACGCCTTCGTGGGACATTGCCACTTCTGCCCTGGAAGTCGTGCAGGTACGTAGTAGCTGCTACTGGCAGAGCAGCAACGCCAAGCAAGAGATGGTCCATGCTTTTCTGACGTTCTCAGAATAGTGGCTAGCCTAAAACCTGACAAGCGCTGCTTGAAGCCGGAACACTGGAGAATGTTGCTGAGAGCAGAAACGGCCACGCGGGTCACGACTATGCATGGGAAAGTCTCAAGCTTCCCTCCTGCCAGCAACAAGAAGGCTTTGGGGTAGGCACGATGTTTTCCTATGTGCGTGCCGTTTCTCCAAGCAGTGCAGGTTCCGCCGTGTGTCAGAGGCTGCAAGTTTAACATCCTCCTGCCTGAAAACAAATAGGTCCCTTGCTGAAAAGAGGGTAAAAAAAGAGCTTTGATCTTCTCAGCCAGGAGAAGAGTGTGGCGTTTTAACACGGGCAACTACTCGCCGGCCTACATGGGGTTAATTCAAGTCTGCTGCGAACACGACTCCGCCTCCAGCAAGCCCTGTTCTCTTTGGGGTACAGGGGAACAGGATGGTTTAGCCTTTCCTGCTCAGTGTGTAAAAAATGTAGCTAAAGCCACTATTTTTGCTCTCTTAAGCTGTTCAATAAACCGGTTCCTCATTTTA

Publications

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