Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name TMEM185AP1
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Plot displaying the genomic locations of a retrocopy (in chr7) and its respective parental gene (in chrUn0002). Each line represents a retrocopy.
Species Oryctolagus cuniculus
Coordinates chr7:62861257-62861740  UCSC
Strand +
Parental Sequence XM_008273468.2
Parental seq. overlap 378 bp
Parental seq. overlap (%) 14.5%
Genomic Region Intergenic
Retrocopy Summary TMEM185AP1, located on chr7:62861257-62861740, is a retrocopy of the parental gene LOC100357430. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC100357430
Full Name N/A
Also known as TMEM185A
Coordinate chrUn0002:13396800-13443658
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens TMEM185AP1
Chimpanzee Pan troglodytes TMEM185AP1
Bonobo Pan paniscus TMEM185AP1
Gorilla Gorilla gorilla TMEM185AP1
Orangutan Pongo abelii TMEM185AP1
Gibbon Nomascus leucogenys LOC100582858P1
Green monkey Chlorocebus sabaeus TMEM185AP1
Crab-eating macaque Macaca fascicularis TMEM185AP1
Baboon Papio anubis LOC101012141P1
Golden snub-nosed monkey Rhinopithecus roxellana TMEM185AP1
Marmoset Callithrix jacchus TMEM185AP1
Mouse lemur Microcebus murinus LOC105857525P1
Pig Sus scrofa TMEM185AP1
Cow Bos taurus TMEM185AP1
Sheep Ovis aries TMEM185AP1
Dolphin Tursiops truncatus TMEM185AP1
Horse Equus caballus TMEM185AP1
Dog Canis familiaris TMEM185AP1
Panda Ailuropoda melanoleuca TMEM185AP1
Pale spear-nosed bat Phyllostomus discolor TMEM185AP1
Velvety free-tailed bat Molossus molossus TMEM185AP1
Greater horseshoe bat Rhinolophus ferrumequinum TMEM185AP1
Egyptian rousette Rousettus aegyptiacus TMEM185AP1
Sloth Choloepus didactylus TMEM185AP1
Rhesus Macaca mulatta Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Cat Felis catus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>TMEM185AP1
CGTGGAGTTCAAAGCCCTGCTGATCGCCGTGGGCATCCACCTGCTGCTGCTCATGTTCGAGGTGCTGGTCTGCGACCGGCTGCAGAGGGGCACCCACTTCTGGCTGCTGGTCTTCATGCCCCTCTTCTTCGTGTCACCCGTGTCGGTGGCCGCCTGCGTGTGGGGCTTCCGGCACGACCGCTCGCTGGAGCTGGAGCTGCTGTGCTCCGTCAACATCCTGCAGTTCATCTTCATCGCCCTGAGGCTGGACCGCATTATCCACTGGCCGTGGCTGGTGGTCTTCGTGCCCCTGTGGATCCTCATGTCCTTCCTGTGCCTGGTCGTGCTCTACTACGTCGTGTGGTCGCTGCTCTTCCTGCGCTCGCTGGACGTGGCGGCCGAGCAGCGGCGGACGCACGTGACCATGGCGGTCAGCTGGATCACCATCGTGGTGCCCTTGCTCACCTTCGAGGTACTGCTGGTTCACAGGCTGGACGGCCACAAC
>XM_008273468.2
GCCCGGAAGGAGGAGGGGAGGTGGCGGAGGCTCCGGTTTCTCGGGGCGGCGGCGGTTGGGATCATGAACCCGCTGTAAGGCGCAGGCTTCGCGGCACGAGGGGAGGGAGGAGGAGAAGGACGCCGCGTTGAAGTTCTCCGCCATGAACCTGAGGGGCCTTTTCCAGGACTTCAACCCGAGTAAATTCCTCATCTATGCCTGCCTGCTGCTATTTTCTGTACTGCTGGCCCTTCGTCTGGATGGCATTATTCAGTGGAGTTACTGGGCTGTCTTTGCTCCAATATGGCTGTGGAAGTTAATGGTCATTGTTGGAGCCTCAGTTGGAACTGGAGTCTGGGCACGAAATCCTCAATATCGAGCAGAAGGAGAAACATGTGTGGAGTTTAAAGCCATGTTAATTGCAGTGGGCATCCACTTGCTCCTGTTGATGTTTGAAGTTCTGGTCTGTGACAGGATCGAGAGAGGAAGCCATTTCTGGCTTCTGGTCTTCATGCCGCTGTTCTTTGTTTCCCCGGTGTCTGTTGCAGCTTGTGTATGGGGCTTTCGACATGACAGGTCACTGGAGTTAGAAATCCTGTGTTCTGTCAACATTCTTCAGTTCATATTCATTGCCTTACGACTGGACAAGATCATCCACTGGCCCTGGCTTGTGGTGTGTGTCCCTTTGTGGATTCTCATGTCCTTTCTGTGCCTCGAGGTCCTCTATTACCTCGTGTGGTCTGTCTAGTTCTTGCGCTCTATGGATGTGATTGCAGAGCAGCGAAGGACTCACATAACCATGGCATTGAGCTGGATGACCATTGTCGTGCCTCTCCTGACTTTTGAGATTCTGCTGGTTCACAAGCTGGACGGCCACAACGCATTCTCGTGTATTCCAATATTTGTCCCACTGTGGCTCTCGCTGATCACTCTGATGGCAACCACATTTGGACAGAAAGGAGGAAACCACTGGTGGTTTGGAATTCGCAAAGATTTCTGCCAATTTCTGCTAGAAATCTTCCCATTTCTGAGAGAATATGGAAACATTTCATATGACCTCCATCATGAAGACAATGAAGAAACAGAAGAAACCCCAGTTCCAGAACCCCCTAAAATTGCTCCTATGTTTCGAAAGAAGGCCAGAGTGGTTATTACCCAGAGCCCTGGAAAGTATGTCCTGCCTCCTCCCAAACTGAATATAGAAATGCCAGATTAAATGCCACTCTCAGGGACAGAGTGTAAGTGGACTGGGACGTACCCTCTCTCCACCTTTCTCTGCCTCTTGTTCACCCCCCAACTCAGACCCAGAACTGGAGCTGGGCCTCCAGGGAAGTCCATCTCATGCCTTGTTTGCATTCAGTGCCAATCAGCTACTCACCATGATGGGATGCGGACATGGCAGGGGACTGGGTCAGGTGTCCATGCGACGTGGATGCCAGGAAGAACATGAAAGGTGAGGCCAGCCTCACCCTGGTGGATACCAGAGGCACTTGCTGGGCTCCATCATCCCCACTGTGGCACAGCTACCTTAATAGGCCCACAGAAGGAGAAGCTAATCTACATGGGAGTTTTCCAAAGTATTAAATTCCCATCCAAAGTGTTTAAAAATGTTTTCAACAGGGCCTGCCTGCACATGTAGCTCAGAGTGTCCTGTTGTGGGTGGTCAGTAGGAACTATAAGATGTCTTGGATGCATCATGTGACGTGTGTAGACACAGTACAGACATCCTTTACCCTGTTCCTACTTTGGAGTAGTTTGCTCTGGGAGTATCCACAGCAGCTTTCAATGCCTTCATCGGTGAGCCCATTCCAGTGGAGTGACTCCATGCCTGTACAGTATTTATACAAATATTTTAGCTTTGTAATATACAGTGTCAGATCCTAGTTCTGTATAGTATATCCTGTTAAAGTATTTTTTTACAAGCTTGTGCCAGGGATGGACATGTTCTGCTGCAGAAGAAGGTGGCAGCGCTCCGGCGCTGCCCCAAGGAAATGCCACACCAGCAGGGGACATGCCATGGATACCCTGGAATTCCCCTGTGCACGTAGTCACTGCCTCTGCCAGAGCTGCTGCAAGGAGCAAGAGATGGCCTGTGCTTCTCTAACATGTGATGAACACCAGCTAGCAACACCCCCTCAAAAGCATTACCTGAGGCAGGACACTCTGGAGCAGTGCAGAGTAGTAATGGCTATGGAGTGGGGTCTGTGTTCAGGTCCAGAGCTTTGTCTGCCAGCAACTGTAGCACTTTGGAGCAGGCTTGAGGCTGTCACATGTGATCACAGTTCCTCTGGGCACTTCTAGTTCTAGCTCTGGATCCAGTCCTGCAAGTGGGCTATCCTTCTGCAAGAAAGCACATAGTTCACTTTTAAAGGAGGATGAGGAGTGTGGATATTCTCACCCTAAAGGAAATGTGGGATTTTAACATGGACAACTGCTAGATGGCCTATATCAGGCATAATTTAAGCCCCACACATACCTGAATCTGCCCCTGGAACTGGCCTTTTATGAATGGAGGGAAAAGGAGAACAGAATGGTGTAGTATTTCCTGCTCTGTGTGTAAAAATCAAAATAGCTAAATCCACTATTTTTGCTCCCCTTAGCTGTTCAATAAACAGTTTCCTCATTTTA

Publications

PMID - Link Title
No publications available for this retrocopy