Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name PGK1P2
Plot displaying the genomic locations of a retrocopy (in chr22a) and its respective parental gene (in chrX). Each line represents a retrocopy.
Species Nomascus leucogenys
Coordinates chr22a:65347761-65349012  UCSC
Strand +
Parental Sequence XM_003268990.4
Parental seq. overlap 1069 bp
Parental seq. overlap (%) 55.1%
Genomic Region Intergenic
Retrocopy Summary PGK1P2, located on chr22a:65347761-65349012, is a retrocopy of the parental gene PGK1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name PGK1
Full Name N/A
Also known as PGK1
Coordinate chrX:68455778-68478774
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens PGK2
Chimpanzee Pan troglodytes PGK1P1
Bonobo Pan paniscus PGK1P1
Gorilla Gorilla gorilla PGK1P1
Orangutan Pongo abelii PGK1P1
Green monkey Chlorocebus sabaeus PGK1P3
Crab-eating macaque Macaca fascicularis PGK1P1
Rhesus Macaca mulatta PGK1P1
Golden snub-nosed monkey Rhinopithecus roxellana PGK1P3
Marmoset Callithrix jacchus PGK1P2
Mouse lemur Microcebus murinus PGK1P1
Rabbit Oryctolagus cuniculus PGK1P3
Pig Sus scrofa PGK1P1
Cow Bos taurus PGK1P1
Sheep Ovis aries PGK1P1
Horse Equus caballus PGK1P1
Dog Canis familiaris PGK1P2
Panda Ailuropoda melanoleuca PGK1P3
Cat Felis catus PGK1P2
Pale spear-nosed bat Phyllostomus discolor PGK1P3
Velvety free-tailed bat Molossus molossus PGK1P2
Greater mouse-eared bat Myotis myotis PGK1P2
Greater horseshoe bat Rhinolophus ferrumequinum PGK1P2
Egyptian rousette Rousettus aegyptiacus PGK1P1
Sloth Choloepus didactylus PGK1P2
Baboon Papio anubis Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Dolphin Tursiops truncatus Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>PGK1P2
TCAAAATGTCTCTTTCTAAGAAGTTGACTTTAGACAAACTCGATGTTAGAGGGAAGCGAGTCATCATGAGAGTAGACTTCAATGTTCCCATGAAGAAGAACCAGATTACAAACAACCAGAGGATCAAGGCTTCCATCCCAAGCATCAAGTACTGCCTGGACAATGGAGCCAAGGCAGTAGTTCTTATGAGTCATCTAGGTCGGCCTGATGGTGTTCCCATGCCTGACAAATATTCCTTAGGGCCTGTTGCTGTTGAGCTCAAATCCTTGCTGGGCAAGGATGTTCTGTTCCTCAAGGACTGTGTAGGCGCAGAAGTGGAGAAAGCCTGTGCCAACCCAGCTCCTGGTTCAGTCATCCTGCTGGAGAACCTGCGCTTTCAtgtggaggaagaagggaagggccAAGATCCCTCTGGAAAGAAGATTAAAGCTGAGCCAGATAAAATAGAAGCCTTCCGAGCATCGCTTTCCAAGCTAGGGGACGTCTATGTCAATGATGCTTTTGGCACTGCGCACCGGGCTCATAGTTCCATGGTGGGAGTGAATCTGCCCCATAAAGCATCCGGATTCTTGATGAAGAAGGAACTAGATTACTTTGCTAAAGCCTTGGAAAACCCATTGAGACCCTTTCTGGCTATACTTGGTGGAGCCAAAGTGGCAGACAAGATCCAACTTATTAAAAATATGCTGGACAAAGTCAATGAGATGATTATTGGTGGTGGAATGGCTTATACCTTCCTTAAGGTACTCAACAACATGGAGATTGGTGCTTCCCTGTTTGATGAAGAGGGAGCCAAGATCGTCAAAGATATCATGGCCAAAGCACAAAAGAATGGTGTAAGGATCACTTTTCCTGTTGACTTTGTTACTGGTGACAAGTTTGATGAGAATGCTCAGGTTGGAAAAGCCACTGTAGCATCTGGCATATCTCCTGGCTGGATGGGTTTGGACTGTGGTCCTGAGAGCAACAAGAATCATGCTCAAGTTGTGGCTCAAGCCAGGCTAATTGTTTGGAATGGGCCGTTAGGAGTATTTGAATGGGATGCCTTTTCTAAGGGAACCAAAGCCCTCATGGATGAAATTGTGAAAGCCACTTCCAAGGGCTGCATCACTATTATAGGGGGTGGAGACACTGCTACTTGCTGTGCCAAATGGAACACTGAAGATAAAGTCAGCCATGTCAGCACTGGAGGCGGTGCCAGTCTAGAGCTTCTGGAAGGTAAAATCCTTCCTGGAGTAGAGGCCCTCAGCAA
>XM_003268990.4
AGCGCCAGGGAGCAATGGCAGCGCGTCGACCGCGATGGGCTGTGGCCAATAGCGGCTGCTCAGCAGGGCGCGCCGGGAGCAGCGGCCGGGAAGGGGCGGTGCGGGAGGCGGGGTATGGGGCGGCAGTGTGGCCCCTGTTCCTGCCCGCGCGGTGTTGGGCGTTCTGCAAGCCTCCGGAGCGCACGTCGGCAGCCGGCTCCCTCGTTGACCGAATCACCGACCTCTCTCCCCAGCTGTATTTCCAAAATGTCGCTTTCTAACAAGCTGACGCTGGACAAGCTGGACGTTAAAGGGAAGCGGGTCGTTATGAGagtcGACTTCAATGTTCCTATGAAGAACAACCAGATAACAAACAACCAGAGGATTAAGGCTGCTGTCCCAAGCATCAAATTCTGCTTGGACAATGGAGCCAAGTCGGTAGTCCTTATGAGCCACCTAGGCCGGCCTGATGGTGTCCCTATGCCTGACAAGTACTCCTTAGAGCCAGTTGCTGTAGAACTCAAATCTCTGCTGGGCAAGGATGTTCTGTTCTTGAAGGACTGTGTAGGCCCAGAAGTGGAGAAAGCCTGTGCCAACCCAGCTGCTGGGTCTGTCATCCTGCTGGAGAACCTCCGCTTTCAtgtggaggaagaagggaagggaaaagatgcTTCTGGGAACAAGgTTAAAGCTGAGCCAGCCAAAATAGAAGCTTTCCGAGCTTCACTTTCCAAGCTAGGGGATGTCTACGTCAATGATGCTTTTGGCACTGCTCACAGAGCCCACAGCTCCATGGTAGGAGTCAATCTGCCACAGAAGGCTGGTGGGTTTTTGATGAAGAAGGAGCTGAACTACTTTGCAAAGGCCTTGGAGAGCCCAGAGCGACCCTTCCTGGCCATCCTGGGCGGAGCTAAAGTTGCAGACAAGATCCAGCTCATCAATAATATGCTGGACAAAGTCAATGAGATGATTATTGGTGGTGGAATGGCTTTTACCTTCCTTAAGGTGCTCAACAACATGGAGATTGGCACTTCTCTGTTTGATGAAGAGGGAGCCAAGATTGTCAAAGACCTAATGTCCAAAGCTGAGAAGAATGGTGTGAAGATTACCTTGCCTGTTGACTTTGTCACTGCTGACAAGTTTGATGAGAATGCCAAGACTGGCCAAGCCACTGTGGCTTCTGGCATACCTGCTGGCTGGATGGGCTTGGACTGTggtcctgaaagcagcaagaagtATGCTGAGGCTGTCACTCGGGCTAAGCAGATTGTGTGGAATGGTCCTGTGGGGGTATTTGAATGGGAAGCTTTTGCCCGGGGAACCAAAGCTCTCATGGATGAGGTGGTGAAAGCCACTTCTAGGGGTTGCATCACCATCATAGGTGGTGGAGACACTGCCACTTGCTGTGCCAAATGGAACACGGAGGATAAAGTCAGCCATGTGAGCACTGGGGGTGGTGCCAGTTTGGAGCTCCTGGAAGGTAAAGTCCTTCCTGGGGTGGATGCTCTCAGCAATATTTAGTACTTTACTGCACTAGTTCCTGTGCACAGCCCCTAAGTCAACTTAGCATTTTCTGCATCTCCACTTGGCATTAGCTAAAACCTTCCATGTCAAGATTCAGCTAGTGGTCAAGAGATGCAGTGCCAGGAACCCTTAAACAGTTGCACAGCATCTCAGCTCATCTTTACTGCACCCTGGATTTGCCTACATTCTTCAAGATCCCATTTGAATTTCTTAGTGACTAAACCATTGTGCATTCTAGagtgcatatatttatattttgcctGTTAAAAGGAAAGTGAGCTGTGTTAGCTTAGTTCTCTTTTGATGTAGGTTATTATGATTAGCTTTGTCACTGTTTCACTACTCAGCATGGAAACAAGATGAAATTCCATTTGTAGGTAGGGAGACAAAATTGATGATCCATTAAGTAAACAATAAAAGTGTCCATTGAAaccgtga

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