Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name PGK1P3
Plot displaying the genomic locations of a retrocopy (in scaffold_m19_p_4) and its respective parental gene (in scaffold_m19_p_9). Each line represents a retrocopy.
Species Phyllostomus discolor
Coordinates scaffold_m19_p_4:86819291-86820548  UCSC
Strand +
Parental Sequence PGK1_x2
Parental seq. overlap 979 bp
Parental seq. overlap (%) 16.7%
Genomic Region Intergenic
Retrocopy Summary PGK1P3, located on scaffold_m19_p_4:86819291-86820548, is a retrocopy of the parental gene PGK1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name PGK1
Full Name N/A
Also known as NULL
Coordinate scaffold_m19_p_9:6606059-6632568
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens PGK2
Chimpanzee Pan troglodytes PGK1P1
Bonobo Pan paniscus PGK1P1
Gorilla Gorilla gorilla PGK1P1
Orangutan Pongo abelii PGK1P1
Gibbon Nomascus leucogenys PGK1P2
Green monkey Chlorocebus sabaeus PGK1P3
Crab-eating macaque Macaca fascicularis PGK1P1
Rhesus Macaca mulatta PGK1P1
Golden snub-nosed monkey Rhinopithecus roxellana PGK1P3
Marmoset Callithrix jacchus PGK1P2
Mouse lemur Microcebus murinus PGK1P1
Rabbit Oryctolagus cuniculus PGK1P3
Cow Bos taurus PGK1P1
Sheep Ovis aries PGK1P1
Horse Equus caballus PGK1P1
Dog Canis familiaris PGK1P2
Panda Ailuropoda melanoleuca PGK1P3
Cat Felis catus PGK1P2
Velvety free-tailed bat Molossus molossus PGK1P2
Greater mouse-eared bat Myotis myotis PGK1P2
Kuhl's pipistrelle Pipistrellus kuhlii PGK1P2
Greater horseshoe bat Rhinolophus ferrumequinum PGK1P2
Egyptian rousette Rousettus aegyptiacus PGK1P1
Sloth Choloepus didactylus PGK1P2
Baboon Papio anubis Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Pig Sus scrofa Without Homology
Dolphin Tursiops truncatus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>PGK1P3
GTATTGTCAACATGTCTCTTTCTAAGAAGTTAACTTTGGACAAACTGGATGTTAAAGGTAAACGAATCATTATGAGAGTAGACTTCAACGTTCCCATGAAGAAGAACCAGATTACAAACAACCAGAGAATCAAGGCTTCAGTCCCAAGCATCAAGTTCTGCCTCGATAAAGGAGCCAAGTCAGTAGTTCTTATGAGTCATCTGGGTCGACCCGACGGTGTTCCCATGCCTGATAAGTACTCCTTGGAGCCTGTTGCTGCTGAGCTCAAATCCTTGCTGGGTAAGGATGTTCTGTTCCTGAAGGACTGTGTGGGCCCTGAAGTAGAAAAAGCCTGTGCAGACCCAGCTCCTGGTTCAGTTATCTTGCTGGAGAATTTACGCTTTCATGTGGAAGAAGAAGGGAAGGGCCTAGATCGTTCTGGAAATAAAATTAAAGCTGAGCCAGAAAAAACAAAAGCCTTCCGAGAGTCACTCTCAAAGCTAGGGGATATCTATGTCAATGACGCTTTTGGCACTGCTCACCGGGCCCACAGTTCCATGGTGGGAGTGAATCTGCCTCAGAAAGCATCTGGATTCTTGATGAAGAAGGAACTGGATTACTTTGCAAAGGCCTTGGAAAAACCAGAGAGACCCTTTCTGGCTATACTTGGTGGAGCCAAAGTTGCAGACAAGATCCAACTTATTAAAAATATGCTGGACAAGGTCAATCAGATGATTATTGGTGGTGGAATGGCTTATACCTTCCTTAAGGTACTCAAAAACATGGAGATTGGTGCTTCTCTGTTTGATGAAGATGGAGCCAAGATTGTGAATGACATTATGGCCAAAGCCAGTAAGAATGGTGTGAACATTACCTTTCCTATTGACTTTGTCACTGCTGACAAGTTTGATGAGAATGCTAAGGTTGGCCAAGCCACGGTAACATCAGGCATACCTGCTGGCTGGATGGGTTTAGACTGTGGTCCTGAGACCAATAAGAAGTTTGCTCAAGTAGTGGCCCAAGCCAAGCTAATTGTGTGGAACGGACCTGTAGGGGTATTTGAATGGGATGCTTTTGCTAAGGGAACCAAAGCCCTTATGGATGAAATTGTGAAAGCCACTTCCAGGGGCTGTATCACCATAATAGGAGGTGGAGACACTGCCACATGCTGTGCCAAATGGAACACTGAAGATAAAGTCAGCCACGTGAGCACTGGAGGAGGTGCCAGTCTAGAGCTTCTGGAAGGTAAAGTCCTTCCTGGAGTGGATGCCCTCAGCAA
>PGK1_x2
ACACTCGCTGCTGTCTCCCTCGCTGTGCGGTCCGTCGGGCTCTCGCTGCTGCTGCTCTATTGCCAAGATGTCGCTTTCTAACAAGCTGACTTTGGACAAGCTGGACGTGAAGGGGAAGCGGGTCGTCATGAGAGTGGACTTCAATGTTCCTATGAAGAACAACCAGATAACGAACAACCAGAGGATCAAGGCTGCCATCCCAAGCATCAAACACTGCTTGGACAATGGAGCCAAGTCCGTTGTTCTCATGAGCCACCTGGGCCGGCCTGATGGCGTCCCCATGCCTGACAAGTACTCCTTGGGGCCAGTTGCTGTAGAGCTGAAATCTCTGCTGGGCAAGGATGTCTTGTTCTTGAAGGACTGCGTGGGCCCAGAAGTGGAGAAAGCTTGTGCTGACCCAGCTGCCGGGTCTGTCATCCTGCTGGAGAACCTTCGCTTTCACGTGGAGGAGGAAGGGAAGGGAAAAGACGCTTCTGGGAACAAGGTTAAAGCCGAGCCAGCTAAAATAGAAGCTTTCCGAGCCTCCCTTTCCAAGCTAGGGGATGTGTATGTCAACGATGCGTTTGGCACTGCTCACCGAGCCCACAGCTCCATGGTGGGAGTCAATCTGCCGCAGAAAGCCGGAGGGTTTTTGATGAAGAAAGAGCTGAACTACTTTGCGAAGGCCTTGGAAAGCCCGGAGCGACCCTTCCTGGCCATCCTGGGCGGGTAGGAAGAACCCTTCACCATTATGCTTTCCGTAGTGTGTTTCCCGGTAGGAGGCCGTGTAATGTGGGTGGTTCATTGTCACACAGCACCATCACACTgggtaacagggcaattgagcgaaggggctacctccaaaggtgtaggtggcttttagggaaactcaaaggggacagtacagtaacctggcattggtaacagctgtcaccatccccaggcccgcaggggcaaagggaggagggaacggttatgagaatctagagagggtggtagtgtggagatggttctctgataggaactgtagcctttgctcaagggacattggggtggtcatctggcagggagggaacagggacataaatattctgatgtcccttcagtttcctcctgacatactgcccccactccagttggctgcagcccagctggaagccataggccaagggagtcccttgatgacatccatgcaggtcagcttcctgggactgaataggaccgggaaggaataaaggtggttctgtggggaagaaagggaaaCTCCCGCCATAGGTGCTCGTCCATCAGTATTTGAAGCATTTGAGGCCTTCACATACATTCAGTCTGACAAGGGATAACTAGGAGAATCTCCTTGTTTGTGTTTAAttttttaaagattttacttactttcttttaaaggagatgggaggggaaaagagggaggaaggaacatctatgtgggagagagacatcaattgtttgctttttgtgcgcccccccccccccccccacttggggacctgggccacaacccaggcatgtgccctgactgggaatcgaactggtgaccctctggttcacaggctggggctccatccactgagccacaccagccagggctcatttgtgtttttaatatatcattTACAGCTCATTTCTCCAGTTCATGTACCATTTTATTGTATCTTCTCCTATTTTAAAGGTATCACGTGGATAATTACATTGCAGTGGCTTAGTTAAAAATAGCTATTTCAGAATTGTAGGTCAAGAGGCTAGCAGGATACATTTTAGGCAATAGAGGAGGGACAGGCACCTGGTACTGCTTGGAAAAGACAACTTCCTGTCACTTGGATTGGCTCTGTAGGTAGCTGCCTCTTTGTGACTGGATACCTCGGACCCTTCTGTGAGCAGGGCTTTTCCCCCGTGGGAATGAACACACTCAGCATTCCCCTCTGAAAGCCAACTCTGGACTCAGGTGTCAATTTCCCGGAGCATAGTTGCTCTCCAGGCTTCGTGAGCCCAGTTTCAGGGTCCTAAAAATAATTCAGTTGGGGACAGGTTATCTGTGTCCTGGGAGCATTGCCCCTCTTATGCACTGGGTTATAAAGGTCAGATTGATCTTTGCTTCCCTGGAGATAGGATTTTAAGCCCTCTTGATTTTTGTTCTCCAGCCTTCTGTAGACCTGGAATGTGGGAGTGAGTGCCACCTAATGGTCATGATTAGGTTTTAGACTCAGCCAGAAATAGCTGTTTTGGGGAAGGCTGGCACCTTCCTTGCAGTGTAGTCTTCTTAGGCCATTAACGATTTGGGGGAAAGTTTTACATTTTTATTAAAAAACGTTATTGTGGGgccctggctggcgtggttcagtggattgagcacggactgtgaaccaaagtgttgcaggtttgattcccagccagggtacattgcctgggttgcaggccatgacccccagcaaccgcacattgatgtttctgtctctctctctttctccctcccttacctctctaaaaataaataaataaaatctttaaaaaaaaaCAttattgtggaagcactcaggcatgcacagaagttgagagaacagtataataaacccccaggtacctctcactctgcttgaacaatttttgacgttttttgccagtctggtttcatttaccatctaatactttttatcaggagttattttaaagtaagccttagatatcacataatacttatgtatgcatctcataactgataagaccatttcttttaaataaccacctaatacaatttaataatcccatctcattagacattataacttaatgtattcagaaattactgatcatctcagaaatgtctctttatagtttgaagaaggatccagaagaagtccatgcattgcatttggttgtttggtatcttctcttctgtattagtcccctgtccttccgtcctttcaggccattgatttattgaagtaggaaatttgagccatagactatcgcacattGTTTAGAAGAGGTTGAGTCTTTCTTGTTTTCTCCCCGCTCCATCGCTCCCCTCCCACTCCCCGTGTAATAGTCACTCCATTCTTACCCTTCATGATGACCAGCCTGTACAAGCCAGATAAACAGTCTCTCGTCATCCATTCCCCCACATCACTACACTTTTCAGTGCCCACTTCGCAGATCCTAGCACAGTGCCTATCCCAGGGTAGCCATCATCTTGTTCATTGAATGAAGAGGAAATGGGCCCAAGGTGATTTGTTTATTTACGTGGGGTTTAGATAATACAGGAATGTGCATGGAAGGCAAGCTCTTATGGGACAGATTGTAAAGGTTGTGCTTCAAGTGAATTTGTTCCTCTTTAGTTTTGATCTTTTTGTCTTTCACAGGGAGTGAACGGAAGTCTATTTTCCTCTATTAGAATATAGGCTCCAAAGCATAGGGATGGCTACGCTGGGACAGGCACTGTGCTAGGATCTGTGAAGTGGGCATTGAAAGTGGCAGTAATGTGGGGGAATGGATGGCAAGAGACTATAATGGTGAACGGAAgtctatttccctctattagaatataagctccaaagcatacatctggttttgtcaactggttgttcttagagacctagaacagtgcctggcatggagtaggtgctcataaatacattgaatCATGTGGGCCAATAGAATAATGAATGCCGTAAAGTAAATGTCCCACTCACTGAGAATAGACTTAAGGGTGTGAATATCTTTCTATTTTTGCTCAGTATGTCTTCATTTGGTATACGAggtctgcccagaaggtatccagctatatactatgaaaaatagaggcatttatggaagaagatacaagaaacactgtccataggacagtgacacctcagtccctttcaaagtagataccttgggacctcacacagtttccccagttgccatcaggtgccccgtgatattttcccgaatctcatcagtggtctgaaatttcttccccttcaaaggtgattttagttttgggagaagccagaagtcgcagggcaccaaatctgggctgtaggggggctgagtcacctgggtgatttgatgtttcaccaaaaaactgcatgtgatgtgatgcatgagctggtgtgttgttttgatgaagctgccaatcaccagttgcccacagctgcagccttctgaattatccaaataatttccatggaggaaagtttaagcttaatgcaaaatctgatgcagatttgtcactgtacttgctcagtcattttgaatgtgatggccacacggtacacatgctcactcagcagtgtttacccactagtacactgactagtgcagtgaggtcatcattgttcacgcatgcacattccagtccactctccttggctgccaggttacatcaatgctatgcaaaaccgttctcgttatattaacagtggctggactttttctgtacaTGCCTCGTATAATCTGGTCCTTGCTCTAGGGTTAAGATACTTCTGAGTGGGCTCTGGGAATCCCACAATTAGCAGTCTTGCTCAGGCATAATCAATCTTGACCGTTTGATTTTGAGGGGCGAAGAGGCAAAATAGACTTATTTGTAAATCATGGTTCCTTTAGATGACAGTAGATCTTCTTAGCCCTTTGTGATCTAACAGGATTTCTTAGTAATGAATTGGCCTTTAGGGTTAGAGAAACATAGGCAGATTTAGCCAATGCTTTTGTCACCTTGTGGGGCATTTTGCTGTTCTTATGGTGATGATTCTCGCTTTCCCTTCTAGAGCTAAAGTTGCAGACAAGATCCAGCTGATCAATAACATGTTGGACAAAGTCAACGAGATGATTATTGGTGGTGGAATGGGTTTTACCTTCCTCAAGGTGCTCAACAACATGGAGaTTGGCACTTCTCTGTTTGACGAAGAGGGAGCCAAGATTGTCAAGGATCTGATGGCCAAAGCCGAGAAGAACGGTGTGAAGATTACCCTGCCGGTTGACTTTGTCACTGCCGACAAGTTTGATGAGAATGCCAAGACTGGCCAAGCCACTGTGGCCTCGGGCATACCTGCTGGCTGGATGGGCTTGGACTGTGGGCCTGAGAGCAGCAAGAAGTACGCCGAGGCTGTCGCGAGGGCCAAGCAGATTGTGTGGAACGGACCTGTGGGCGTGTTTGAATGGGAAGCTTTCGCCCGAGGGACCAAGGCCCTCATGGACGAGGTGGTGAAAGCCACTTCCAGGGGCTGCATCACCATCATAGGTGGTGGAGACACTGCCACTTGCTGTGCCAAATGGAACACGGAGGACAAGGTCAGCCATGTGAGCACCGGGGGTGGTGCCAGCTTGGAGCTCCTGGAAGGTAAAGTCCTTCCTGGGGTGGATGCTCTCAGCAATGTTTAGTCCTTTTCCCGCCTTATGGTTCCTGGGCGCATCCTGTAACTCCACTTAGTGCTTTCCGCGTCTCTACTTGGTATTAGCTACAGTCTTCCCCCACCCCCCTGGCAAGATCCAGCTACTAGTGGCCGAGAGATGCAGCCCAGGAACACGTAACACAGCCGCACGGCAGCGGCACATCAGCTCACCCTCACTGCACCCTGGATCTGGCTACATTCTTCGGGATCCCATCTGCATTTGCTAGTGGCTAAACCACTGTGCATTCTAGAGTGCATATATTTATATTTTGCCTGTTAACCTGTTAGCTTAATCCTCTTCTTGGAGTAGCTGACTCTGATGAGCATTGCCATTGTTTTGCTACATGAAAACAAGATAAAATTCCAGCTGTGAGGAGGGACGGAGAGGAAGTTGGAGATCTATTAAATAAATAAATAATAAAAGTATTCTTTG

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