Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LDHAL6AP2
Plot displaying the genomic locations of a retrocopy (in chr6) and its respective parental gene (in chr12). Each line represents a retrocopy.
Species Papio anubis
Coordinates chr6:104984351-104985312  UCSC
Strand +
Parental Sequence XM_021925959.2
Parental seq. overlap 825 bp
Parental seq. overlap (%) 26%
Genomic Region Intragenic (TMEM242)
Retrocopy Summary LDHAL6AP2, located on chr6:104984351-104985312, is a retrocopy of the parental gene LDHAL6A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LDHAL6A
Full Name N/A
Also known as -
Coordinate chr12:77790895-77818353
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens LDHAL6FP
Chimpanzee Pan troglodytes LDHAL6AP2
Bonobo Pan paniscus LDHAL6AP2
Orangutan Pongo abelii LDHAL6AP2
Gibbon Nomascus leucogenys LDHAL6AP1
Green monkey Chlorocebus sabaeus LDHAL6AP5
Crab-eating macaque Macaca fascicularis LDHAL6AP1
Rhesus Macaca mulatta LDHAL6AP1
Golden snub-nosed monkey Rhinopithecus roxellana LDHAL6AP2
Marmoset Callithrix jacchus LDHAL6AP4
Mouse lemur Microcebus murinus LDHAL6AP1
Dolphin Tursiops truncatus LDHAP1
Dog Canis familiaris LDHAP1
Panda Ailuropoda melanoleuca LOC100474915P2
Cat Felis catus LDHAL6AP1
Greater horseshoe bat Rhinolophus ferrumequinum LDHAP2
Egyptian rousette Rousettus aegyptiacus LDHAP1
Gorilla Gorilla gorilla Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Horse Equus caballus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LDHAL6AP2
GTTCATCGCAGTAAGGTCTCCATCACAGGAACTGGATCGGTGGGCATGGCCTGCGCTATCAGCATCTTATTAAAAGGCTTGAGTGATGAACTTGCCCTTGTGGATCCTGATGAAGGCAAACTGAAGGGTGAGACGGTGGATCTTCAACATGGCAGCCCTTTCATGAAAATGCCAAGTATTGTTTGTAGCAAAGATTACCTTGTCACAGCAAACTCTAGCCTAGTGATTATCACAGCAGGAGCACGCCAAGAAAAGGGAGAAACGCGCCTTAATTTAGTCCAGTGAAATGTGGCCATCTTCAAGTTAATAATTTCCGGTATTGTCTAGTACAGCCCCCTCTGCAAGCTGATTATTGTTTCCAATACAGTGGATGTCTTAACTTATGTAGCCTGGAAGTTGAGTGCATTTCCCAAAAACCGTGTTATTGGAAACGGCTGTAATCTGGATACTGCTCGTTTTCGTTTCTTGATTGGATAAAAGCTCGGTATCCACTCTGAAAGCTGCCGCGGATGGATCCTCAGAGAGCACGGAGactcaagtgtgtgtgtgtggagtggaGTGAACATAGCTGGTATCCCTTTGAAGGATCTAAACTCTGATATAGGAACCGATAAAGATCCTGAGCAGTGGAAAAATGTCCACAAAGAAGTGATTGCTAGTGCCTATGagattattaaaatgaatacttCTTGGACCATTGGCCTATCTGTAGCTGATTTAACAGAAAGTATTTTGAAGAATCTTAGGAGAACACATCCAGTCTCCACCATCATTAAGGGTCTCTATGGAATAGATGAAGAAGTATTCCTCAGTATTCCTTGTATCCTGGGAGAGAATGGTATTACCAACCTTATAAAGATAAAGCTGACCCCTGAAGAGAAGGCCCACCTGAAAGAGTGCAAAAACACTTTGGGAAATTCAGAAGGAGCTGAAGCTTTAAAGTTGTCTAAAACTACCATTCT
>XM_021925959.2
ggattacagcgtgagccaccgcgctcggcccagaggtttaaaattttactttttctactttAGCTCACATTTGAGGTGGTAAAAGTTAATCTTGAGGTCCCTTTCTCCTACAGTGCTGGGGAAAAATTTCCAAATGAGAGTCAAAAAGTCCTTTTCAGATACATCCAGACAAGGTTTGgttagaaataaaattacctgGGCTCTCTGGTGGATGGGTTCTAGGCAAACAACTCCACCGGACAGGAGAGGCCGTGCACTGCATTGTGCCTGCCTCACCTCGGGTGCCTTCTGCAGCCGGCCAACCACCGACACAGCAGCGCGCCCACCAGCacgcgggggcggggcgggcagGCAGAGGCGCAGGTGCGGTGCTTCACAGCCCGCTTCCAGCCTCACACCTGCCAAGCATCACACCTGCGATGCCTGCACGAGCTGGGTGCGGTCCGCGCAGCTGCAGTAAGGAGGTGACCCGGCGTCTATTAGTTGGTGGTTCATCTCCTTCGTGCCTCGAGGAGCTGTAACGCCGCTTTCCTCCATTCTCTTTCTTCACTCTTGAGTGAGTGGCTATGAGCTGGGCTGCAAGAGTCCTGGGGAGCAGCCAGAGAGCGGGCGCCGCGGGAGCGAATTGTTTTTGCCCAAGGATGGTTCCGTGTCTCCGCCAGGCGGCATGTGACCTGCTCAGGCGCGGGTGGCCCTTCACCCCTGTTTCCAAGATGGCAACTGTCAAGAGTGAACTTATTAAGAATTTCACGAAAGAGGAGGCCATTCATCACAATAAGATCTCCATTGTAGGAACTGGATCGGTTGGTGTGGCCTGTGCTATCAGCATCTTATTAAAAGGTTTGAGTGATGAACTTGTCCTTGTGGATGCTGATGAAGGCAAACTGAAGGGTGAGACAATGGATCTTCAACATGGCAGCCCTTTTATGAAAATGCCAAATATTGTCTCCAGCAAAGATTACTTGGTCACTGCAAACTCCAATCTAGTGATTATCACAGCAGGTGCACGccagaaaaaaggagaaacacgCCTTGATTTAGTCCAGCGAAATGTGTCCATCTTTAAATTAATGATTCCCAATATTACCCAATATAGCCCTCACTGCAAACTGCTTATTGTTACTAATCCAGTGGATATCTTAACTTATGTAGCCTGGAAGTTGAGCGCATTTCCCAAAAACCGTGTTATTGGAAGTGGTTGTAATCTGGACTCTGCTCGTTTTCGTTACTTTATTGGGCAAAGGCTTGGCATCCACTCTGAAAGCTGTCATGGGCTGATCCTTGGAGAGCATGGCGACTCAAGTGTTCCTGTGTGGAGTGGTGTGAACATTGCTGGTGTCCCTCTGAAGGATCTGAACCCAGATATAGGAACTGATAAAGATCCTGAGCAGTGGGAAAATGTCCACAAAAAAGTGATTTCCAGTGGCTATGAGATGGTCAAAATGAAAGGTTATACTTCTTGGGGCATTAGCCTATCTGTAGCTGATTTAACAGAAAGTATTTTGAAGAATCTCAGGAGAGTGCATCCAGTTTCTACCCTAAGTAAGGGCCTCTatggaataaatgaagaaatattcctTAGTGTCCCATGTATCCTGGGAGAGAATGGCATCACAGACCTCATAAAAGTGAAACTGACCCTTGAAGAGGAGGCCTGCTTGCAAAAGAGTGCAGAAACACTCTGGGAAATTCAGAAGGAACTCAAGTTTTAAAGTTGCTTAAAGTTACCATTCTATAGATTGAAGATGAAATAGTAGTTATGGAATTGTATAtgtcaaactttaaaataaatttgaatttctaaaagttggaaaaatagaGGAAAGAGTGACCTATTTAGTGTAGCCTTCCAGCTTTTTTGTTTTGGgtgggtctcattctgttacccaagctggaatgcagtggcaccatcacggctcactgcaaccttgacctcccgaactcaggtgagcctcccacttcagccttcagagtaggtgggaccacatgtgtgtgcctccatgcctggctaatttttctattttttttgtagagatggggttttgaactcccaaagtgctgtgattacaggggcgagccactgtgcttggccttagCTTTGATTTAGTATCCAGATGATGGacgatacttctttttttttttcccaaacaaaagtGATGGCATCAAAGATGTTTTTGGTATCTTTTAGTACTTGCCTTGTATGTATACGTAACTGCCATCTGGTCCATGAGAATGTGTATGCTGTGTTACAGAAATCTTGATTCTTTTCATCAGGTGCATAGTAATTCTTCTCTATGGCTTAATACCTGTGTTTACATGCTATTTAATAAAAGCTTTAATTTCCTctacaatgtaaaaataaaaatatatatatgcacacacacacacaaagtaatcTAAATGTTCCTAACATTAGATAAAACCTTGATTTGACCTTGCTGGTTTTTCTTCTGGTAACTTTTATgagtgcattttaatttttacagaaaagGTCTTAAGCTGTAAACCCCTTGGTGACAACAGATTAAACTGGTCGTTCTTCTCTTGGGAGTAGAATGGGCTGCCTAATTATCTTAGTAACATCCCAAATCAGAATATACTTTCCTTTATAGCCTCATGAGCCTTCTAGCACTCTCATTTTGATCAAGAACATTCTATTCTGGATGAGCTCTGCAGGACATACAGTAGCTACATAGTTCATTGGGTGGTCACAAACTTGGCTACAGAATCACTCACCATGAAGACGAAACTTTAAATGACAAAGCAGGGAGGCAATGGTACACTGTATCTTTCCCCTTAATCCTAAAGTTATCAGGTATATAGTTTGGACCTGCCACTGTGCTCCTTTCTGATGAAAACACTTATGGTTCACTGAGgcctagaaagaaaacaaatttagtaGGATTGGTAGGAGAGTATCACCTTGGACCTTTCACAGATAAGTTACTCAAatcctttcaaatatttcaaaatttagattTCTATTTGGTATATCCCCATATTCACTTCATATGCTGTAGAATAATACTAAtttcaacttaagatggattttatgctttttttgcTAAATGAAAAATTGGGCTTATTAAGGTTTCATGGATCTTTCCTAAAGTtcaataaaggagagaaaaattatgcAACAAATTTTATTTAGCAGTCCCAACA

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