| Retrocopy Name | LOC100474915P2 |
|
| Species | Ailuropoda melanoleuca | |
| Coordinates | chr10:100133918-100134639 UCSC | |
| Strand | - | |
| Parental Sequence | XM_011233514.3 | |
| Parental seq. overlap | 589 bp | |
| Parental seq. overlap (%) | 49.4% | |
| Genomic Region |
Intergenic |
|
| Retrocopy Summary | LOC100474915P2, located on chr10:100133918-100134639, is a retrocopy of the parental gene LOC100474915. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
| Gene Name | LOC100474915 |
| Full Name | N/A |
| Also known as | LDHAL6A |
| Coordinate | chr16:51264204-51283149 |
| Strand | + |
| Gene summary | N/A |
| Species | Scientific Name | Retrocopy | |
 |
Human | Homo sapiens | LDHAL6FP |
 |
Chimpanzee | Pan troglodytes | LDHAL6AP2 |
 |
Bonobo | Pan paniscus | LDHAL6AP2 |
 |
Orangutan | Pongo abelii | LDHAL6AP2 |
 |
Gibbon | Nomascus leucogenys | LDHAL6AP1 |
 |
Green monkey | Chlorocebus sabaeus | LDHAL6AP5 |
 |
Crab-eating macaque | Macaca fascicularis | LDHAL6AP1 |
 |
Rhesus | Macaca mulatta | LDHAL6AP1 |
 |
Baboon | Papio anubis | LDHAL6AP2 |
 |
Golden snub-nosed monkey | Rhinopithecus roxellana | LDHAL6AP2 |
 |
Marmoset | Callithrix jacchus | LDHAL6AP4 |
 |
Mouse lemur | Microcebus murinus | LDHAL6AP1 |
 |
Rat | Rattus norvegicus | LdhcP1 |
 |
Chinese hamster | Cricetulus griseus | Ldha_1P3 |
 |
Pig | Sus scrofa | LDHAP1 |
 |
Cow | Bos taurus | LDHAP1 |
 |
Sheep | Ovis aries | LDHAP1 |
 |
Dolphin | Tursiops truncatus | LDHAP1 |
 |
Dog | Canis familiaris | LDHAP1 |
 |
Cat | Felis catus | LDHAL6AP1 |
 |
Greater horseshoe bat | Rhinolophus ferrumequinum | LDHAP2 |
 |
Egyptian rousette | Rousettus aegyptiacus | LDHAP1 |
 |
Gorilla | Gorilla gorilla | Without Homology |
 |
Mouse | Mus musculus | Without Homology |
 |
Rabbit | Oryctolagus cuniculus | Without Homology |
 |
Horse | Equus caballus | Without Homology |
 |
Pale spear-nosed bat | Phyllostomus discolor | Without Homology |
 |
Velvety free-tailed bat | Molossus molossus | Without Homology |
 |
Greater mouse-eared bat | Myotis myotis | Without Homology |
 |
Kuhl's pipistrelle | Pipistrellus kuhlii | Without Homology |
 |
Sloth | Choloepus didactylus | Without Homology |
 |
Tasmanian Devil | Sarcophilus harrisii | Without Homology |
 |
Opossum | Monodelphis domestica | Without Homology |
 |
Platypus | Ornithorhynchus anatinus | Without Homology |
 |
Chicken | Gallus gallus | Without Homology |
 |
Turkey | Meleagris gallopavo | Without Homology |
 |
Zebra Finch | Taeniopygia guttata | Without Homology |
 |
Budgerigar | Melopsittacus undulatus | Without Homology |
 |
Painted Turtle | Chrysemys picta | Without Homology |
 |
Lizard | Anolis Carolinensis | Without Homology |
 |
Frog | Xenopus tropicalis | Without Homology |
 |
Zebrafish | Danio rerio | Without Homology |
 |
Drosophila | Drosophila melanogaster | Without Homology |
| >LOC100474915P2 |
| TGAAGATGCCAACTATTGTGTCCAGCAAAGATTACCTTGTCACTGCAAATTCCAGCCTCGTGGTCATCACAGCAGGAGCACGCCAGGAAAAAGGGGAAACACGCCTTAATTTAGTCCAACGAAATGTGGACATCTTTAAATTAATGATTTCCAGTATTACCCAATATAGCCCTCGCTGCAAACTGATTGTTGTTTCCAATCCAGTGGATATATTAACTTATGTGACCTGGAAGTTGAGTGAATTTCCCCCAAACCGTGTAATTGGAAGTGGTTGTAATCTGGACACTGCCCGTTTCCGTTTCTTGATTGGGCAGAAGCTTGGTATCCACTCTGAAAGCTGTCATGGGTGGGTCCTTGGAGAGCATGGAGACTCGAGTGTTCCTGTGTGGAGTGGAGTGAACATCGCTGGTGTCCCTCTGAAGGATCTGAACTCAGACATAGGAACTGATCAAGATCCTGAGCAGTGGAAAAATGTCCACAAAGATGTGATTGCTAGTGCCTATaagattattaaaatgaaaggttATACTTCTTGGGCCATTGGCCTATCTGTAGCTGATTTAACAGAAAGCATTGTGAAGAATCTTAGAAGAGTGCATCCAGTTTCCACCATAATTAAGGGTCTCTATGGAATAAATGAAGAAGTATTCCTCAGTGTTCCATGTATCTTGGGAGAGAATGGTATTGCAGACCTTATAAAGATAAAGCTGACCACTGAAGAA |
| >XM_011233514.3 |
| ATGGTTTGCCCCTTTGCAGCCTTCAACAGTTCTTCTGCCGTTTCCCTCCATTCTTTTCGTCTGCCTCGCGAGGGGACGGCCATGAGCGGGGCCGCTGGAGTCCTGCGGACCAGCCGGAGCGTGGGCGCCGCGGGAGCGAATTTCTTTTGCCTGAGGATGGCTCTGTGTGCCTTGCAGACCGCACGCATCCCGGTCAGGGGTGGCTGGCCCTTCACCCGCGTGAGTGTGATGGCGACCGTCAAGGGTGAACAGAATTTCACTTCGGAGGAGGCCGTTCATTGCAATAAAATCTCCATTATAGGAGCTGGAGCCGTTGCTTTGGTAGCAATCAGCGTCTTATTAAAAGGTTTCAGTGATGAACTTGCCTTTGTGGATGTTGATGAAGGCAAATGGACTGGTGAGACAATGGACTTCATGAAAATGCCAAACATTGTTTCTAGCAAGGATTACCTTGTCACTACAAACTCCCACATAGTGATTATCATAGCAGGTGCATGCCAGATCAAAGGAGAAACACGCCTTGATTTAGTCCAGTGAAATGTGTCCATGTTTAAATTAATGATTCCCAGTATTATCCAATACAGTCCATGCTGCAAACTGATTATTGTTTCCAATTCAGTGGGTATCTTAACCTACGTAGCCTGGAAGTTGAGTGCATTTCCCAAAAACCGTGTTCTCGGTAGTGGCTGTAATCGGGACACTGCCCATCTCCATTTTGGGCAGAGGCTTGGTATCCATTCTGAAAGCTGTCATGTGTTGGTCCTGGGAGAGCATGGAGACTCGAGTGTTCTTGTGTGGAGGGGAGTGAACATTGCTGGGGTCTCTCTGAAGGACCTGAACTTAGATACAGGAACTGATAAAGATCCTGAGCAGAAGGGAAAGTCCACAGAGAAGTATGGCTATGAgatgattaaaaagaaaggatatacTTCTCGGGGTGTTTCCCTGTCTGTGGCTGATTTAATGGAAAGTATTTTGAAGAATCTCAGGAGAATACATCAAGTTTCCACCATAAGTAAGGGCGTCTATGGAATAAAAGTAGTAGTATCCTTAGTTCCTTGTGTCCTGGGAGCACTGAATGGTGTTACAGATCTCATAAAGGTCAAGCTGACCCCTGAAGAGGAGGCTCGTTTGAAAAAGAACTGGGAAATTCAGAAGGAGCTCAAGCTTTAA |
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