Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC100400163P4
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Plot displaying the genomic locations of a retrocopy (in chr22) and its respective parental gene (in chr22). Each line represents a retrocopy.
Species Callithrix jacchus
Coordinates chr22:18400031-18401181  UCSC
Strand -
Parental Sequence XM_017969102.2
Parental seq. overlap 873 bp
Parental seq. overlap (%) 57.3%
Genomic Region Intergenic
Retrocopy Summary LOC100400163P4, located on chr22:18400031-18401181, is a retrocopy of the parental gene LOC100400163. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC100400163
Full Name N/A
Also known as -
Coordinate chr22:20772628-20782280
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens ZNF708P4
Chimpanzee Pan troglodytes LOC100611724P6
Bonobo Pan paniscus LOC100986753P4
Gorilla Gorilla gorilla LOC101145569P7
Orangutan Pongo abelii LOC100445798P3
Gibbon Nomascus leucogenys LOC100584580P2
Green monkey Chlorocebus sabaeus LOC103234268P4
Crab-eating macaque Macaca fascicularis LOC102128845P3
Rhesus Macaca mulatta ZNF195P6
Baboon Papio anubis LOC103880007P2
Golden snub-nosed monkey Rhinopithecus roxellana LOC115900740P3
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC100400163P4
AATGAACTAAACCAGTGTTTGACAACTACCCAGAGTGAAATATTTCAATGTGATCAATATGTGAACGTCTTTTACacattttcaaattcaaatataCATGAGATAAGATATACTGGAAAGAAAcctttcaaatgtaaaaaatgtgaCAAATCATTTTGCATGCTTTTACACCTAACTCAACATAAAAGAACTCATATTAGGGAGAATTCTTAccaatgtgaagaatgtggtaaaGTCTTTAACTGGTTCTCAACCCTTACTAGACACaggagaattcacactggagagaagccctacaaatgtgaagactgtggcaaagcttttaagcAGTCTTCAACTCTTACTgcacataagataattcatactggagagaaaccttacagaTGTGACGAATGCGGCAAAGCCTTTAACCGGTCCTCGCACCTTACTACTCATAAAAGAatccatactggagagaaaccctacagatgtgaagaatgtggcagagCTTTTAACCGGTCCTCACATCTTACTACACATAAGAttattcatactggagagaaaccctacaaatgtgaggaatgtggcaaagcctttaaccaGTCATCAACCCTTACTACACATAAGGTAATTCAtgcaggagagaaaccctacaaatgtgaagaatgtggcaaagctttttaCCGATTCTCATACCTTActaaacataagataattcatactggagagaaatttTACAAATGTGACGAATGTGGCAAAGGCTTTAATTGGTCATCAACGCTTACtaaacataaaagaattcatactggagagaaaccctacaaatgtgaagaatgtggcaaagcttttaatgAGTCCTCAAACCTTACTgcacataagataattcatactggagagaaaccctacaaatgtgaagaatgtggcaaagcattTAACCGTTCCCCAAAACTTAATGCACATAAagtaattcatactggagagaaaccctacaaatgtgaagtatgtggcaaagcttttaaccaaaTGTCAAACCTTACTAAACATAAGATAACTCATACTGGGGATACATCTTACAAATACCAAGAATGTGATAAAGCCTTTAACCCATCCTCAACTCTTACTAAACATAAGGtaattcatacaggagagaaaccataCAACTGTGAAGAATA
>XM_017969102.2
ATggatgtggccatagaattctGTCTGGAGGAGTGGCAATGCCTGGACACTGCACAGCACGATTTATATAGGAATGTGATGTTAGAGAATTACAGAAACCTGGTCTTCCTGGACCTGATCACCTGTTTGGAGCAAGGAAAATTACCTTGGAATGTGAAGAGACATGAGATGGTAGCTGAAcccccagctgtATGTTCTTATTTTGTCCAAGACCTTTGGCCAAAGCAGGGCATAAAAAATTGTTTCCAaaatgtgatactgagaagatataaaaaatgtggacataaaaatttgcatttaagaaaattttgtcAAAGCATATTTGAGTGTAAGGTGCGCACAGAATGTGACAATGGACTTAACCAGTTTTTGACAACTACCCAGAGCAAAATATTTCCATGCAACAAATTTGTGAAAGTCTTtcataaattttcaaattcaaaaaGACATAAGATAAGACAAACTGGAAAGAATCCtttcaaatgtaaagaatgtgatAAGTCACTTTGTACACTTTCACAGTTAGCtcaacataagataattcataccggagagaaaccctacaaatgtgaagaatgtggcaaagcttttaaccaaaagaaaaacCTTACTACACATGAGAGAATTCATACtgaagagaaaccctacaaatgtgaggattgtggcaaagcctttaaccaATCCTCAAACCTTACTAtgcataagataattcatactggagagaaactctacaaatgtgaagaatgtggaaaaacctCTTACCAATTTGCACACCTTCCTACACATAAGAGAAATCATACTgtggagaaaccctacaaatgtgaagaatgtggtaaaGCTTTTAACCAGTCCTCAACccttactacacataagaaaattcatacttgagagaaaccctataaatgtgaagactgtggcaaagcttttagccAATCCTCACACCTTAGTACACATAAAATTATTCATAGTGGAGAGAAactctacaaatgtgaagaatgtggcaaggcCTTTAGCGGGTTCTCACATCTTACTAGTCATAAGATAATTCATATGAAAGTAACCCTACAAATGTtaggaatgtggcaaagcttttagtCAATCTCTAaaccttactacacataagagaATTGGTACTGGAAAGAAATCCTACAAATGTGAAGGAAGTGGCACAGCCTTTAGCGAGTCCTCAAATCTTATTAGAACTAAGACAGTTCATAATGGAGAGAAACCCTAAaagtgtgaagaatgtggcaaagccttcaaCGTCCTCAACCCTTAACAGACATAAGAtgattcacactggagagaaactctAGAAACCCTAAAGTTGTGACAATGCTGGTGACAACACCTCAAACAAAAAACTATGCTGGTGAGAAATATGAATAATGTGACAAACCCTTTAAATGGTTGTCACACTTGATTGTAGGTaagatcattctttttttt

Publications

PMID - Link Title
No publications available for this retrocopy