Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC105863290P1
Plot displaying the genomic locations of a retrocopy (in chr8) and its respective parental gene (in NW_017968531). Each line represents a retrocopy.
Species Microcebus murinus
Coordinates chr8:112958262-112959646  UCSC
Strand +
Parental Sequence XM_020285367.1
Parental seq. overlap 1056 bp
Parental seq. overlap (%) 65.1%
Genomic Region Intergenic
Retrocopy Summary LOC105863290P1, located on chr8:112958262-112959646, is a retrocopy of the parental gene LOC105863290. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC105863290
Full Name N/A
Also known as -
Coordinate NW_017968531:126993-142659
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens ZNF72P
Chimpanzee Pan troglodytes ZNF107P2
Bonobo Pan paniscus LOC103783565P5
Gorilla Gorilla gorilla ZNF66P1
Orangutan Pongo abelii LOC100451404P3
Gibbon Nomascus leucogenys LOC100602950P2
Green monkey Chlorocebus sabaeus LOC103234280P4
Crab-eating macaque Macaca fascicularis ZNF195P3
Rhesus Macaca mulatta ZNF195P2
Baboon Papio anubis LOC103880007P1
Golden snub-nosed monkey Rhinopithecus roxellana LOC104669310P8
Marmoset Callithrix jacchus LOC100400163P1
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC105863290P1
CCTGGAGAGAAAAAATACAcatgtgaggaatgtggcaaagtTTTTAAGTGGTCCTCACACTTTACTgtacataagagaattcatatgGGAGAGAAGCCttacaaatgtgaggaatgtggcaaagcttttatCCATTACTCAAAACTTAAAGAACATAAGAGAAtacatactggagagaaaccatacaaatgtgaagaatgtggcaaagcctttagcAGTTGCTCAAAACTTAAAagacataagagaattcatactggagagaaaccatacaaatgtgaagaatgtagcAAAGCCTTTACCTTGCTCAACACTTAAAGACATAAGAGAATGCATACTGGAGGAGAACCacacaaatgtgaagaatgtggcaaagcctttagcCGTTGCTCAACACTTAAAAGACATAAGAGAAtgcatactggagagaaaccacacaaatgtgaagaatgtggcaaagcctttagcTATTGCTCAACAACTTAAATACACAAGAGAATGCATACTGGAGAAACacacaaatgtgaagaatgtggcaaagcatttAGCTGTTCCTCACCACACTTTACGTAGCATAAGAGAATTCATATGGGAGAGAAGCCttacaaatgtgaggaatgtggcaaagcttttatCCATTACTCAAAACTTAAAGAACATAAGACAAtacatactggagagaaaccgtacaaatgtgaagaatgtggcaaagcgtTTAACTGGTCCTCACACTTTACTgtacataagagaattcatactggagagaaaccatacaaatgtgaagaatgtggcaaagcctttagcCGTTGCTCAAAACTTAAAATACATAAGAGAAtgcatactggagagaaaccatacaaatgtgaagaatgtggcaaagcttttagCTGTTGCTCAAAACTTAAAAGACATATGAGAAtacatactggagagaaaccattcaaatgtgaagaatgtggcaaagcatttAACAGGTCTTCACAACTTAAAGGTCATAACataattcatactggagagaaaccctacgaATGTGAAGATTGTGGCAAAGCATTTACCTATTGCTCACGACTTAAAGCACATAAGAAAAtgcatactggagagaaaccatacaaatttgaagaatgtggcaaagcctttaactgGTCCTCACACTTTATTGTACACAAGAATATACATAATGGAGAGAAACCATTCAAATGTTGagaatgtggcaaagcatttAACTGGTTCTCACACTTCATCGCACATAAAAGAAGTCATACTGGAGAGAAAGTGTACAAATGTGAAGGATGTGGCAAAACCTTTAAACAGTCCTCAAGCCTCATTACACATaggagaattcatactggagagaaaccgtTCAAGTGTCAAGAATGGCAAAGCATTTA
>XM_020285367.1
ATGGTGACATTCAGGGATGTGGCTGTAGAATTCTCTCCAGAGGAGTGGGCATGCCTTGACAATGCTCAGCAGAATTTGTATAGGGATGTGATGTTAGAGAACTACAGAAACCTGGTCTCCCTTGgtCTTGTTGTCTCAAAACCAGAGCTGATCACATGTCTGGAGCAAAGCATAGAGCCCTGGattatgaagaaagaggaaacaacaGCCAAATATCCAGaACTCTCTTCCCATTGCAACAAAGACCTGTTGCCTGAGCAGGGTATAAAAGACCCCTTTCAGAAATCAATAATGAGATTATATGGAAGAAATGGCCTTGAAAATATACACTTAAGAAGAGACTGGGAGTGTGTGGGTGAGTATAAGAGGCAGAAAGCATGTTATGATGGTCTTACCCAATGTTTGTCAACTTGCCACAGAAAATTATTCAAatgttataaatgtataaatgtctTTAGCAAATCATCAAATCTAAATAGACACAAGNNNNtccatactggagagaaaccctacaaatgtaaagaatgtggcaaagcttttacCCGCTGCACACACCTTACTcgacataaaagaattcatactggagagaaaccctacaaatgtgaaatatgtggcaaagcctttaaccaGTCCTCAGTCCTTACTTGACATAaaagaatccatactggagaaaaaccctacaaatgtgaagaatgtggcaaggCCTTTAGCCTGTGCACAAACCTTACTCGACATAAAacaatccatactggagagaaacCCTACAAgtgtgaagaatgtggaaaacCCTTTAACTGTTGCTCAAAACTTATTATACATaggagaattcacactggagagaaaccctacaaatgtgaagaatgtggcaaagcctttacccagtGCATacaccttactcaacataaaagaatccatactggagagaaaccctacaaatgtgaagaatgtgacaAAGCCTTTAACCAGTTCTCAATCCTTAgtcaacataaaagaattcatactggcgagaaaccctacaaatgtgaagaatgtggcaaagcctttaactgGTCCTCAACCCTTActctacataaaagaattcatactggagagaaaccctacaaatgtgaagaatgtggcaaagcctttaatcAGTCCTCAATCCTTACTCGacataaaaaaattcatactggagagaaaccctacaaatgtgaagaatgtgacaAAGCCTTTGCTGAGTCCTCAacccttactcaacataaaagaatccatactggagagaaacattacaaatgtgaagaatgtggcaaagcctttactcAGTGTTCAggccttactcaacataaaagaattcatactggagagaaaccctacaaatgtgaagaatgtggcaaagcctttaaccgGTCCTCAatccttactcaacataaaataattcatactggagagaaaccctacaaatgtgaagaatgtggcaaagcctttacccagtGGTCAagccttactcaacataaaagaattcatactggaggtAAACCCTAA

Publications

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