Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name ZNF195P3
Plot displaying the genomic locations of a retrocopy (in chr3) and its respective parental gene (in chr14). Each line represents a retrocopy.
Species Macaca fascicularis
Coordinates chr3:63521569-63521720  UCSC
Strand -
Parental Sequence XM_015434308.1
Parental seq. overlap 130 bp
Parental seq. overlap (%) 4.6%
Genomic Region Intergenic
Retrocopy Summary ZNF195P3, located on chr3:63521569-63521720, is a retrocopy of the parental gene ZNF195. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ZNF195
Full Name N/A
Also known as -
Coordinate chr14:3241921-3267638
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens ZNF72P
Chimpanzee Pan troglodytes ZNF107P1
Bonobo Pan paniscus LOC100972001P3
Gorilla Gorilla gorilla LOC101130248P3
Orangutan Pongo abelii LOC100447016P3
Gibbon Nomascus leucogenys LOC100585703P11
Green monkey Chlorocebus sabaeus LOC103234271P1
Rhesus Macaca mulatta ZNF195P5
Golden snub-nosed monkey Rhinopithecus roxellana LOC104671909P1
Mouse lemur Microcebus murinus LOC105863290P1
Baboon Papio anubis Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>ZNF195P3
AGAGAAACCCTACAAATGTCAAGAATTTGGCAAAGCCTTGAACCAGTGCTCACACCTTATTGGACATAAGAGAATTCATACTGGAGAGAAATCTTACAAATGTGAAGAATGTGGCAAAGCCTTCAACCAGGGCTCACATCTCACTGGACATA
>XM_015434308.1
GGGGCCTTTGTCCAGACAGAGTTCCACTTCCTGTCCCCGCCGCTTTGCGTCCTCTGCTAGCCGTTGGCCGTGTGACCCGACCCGCAGGCACCGGGAGATCCAGAAGTGAAACGTCAGGCTCCCTGGAGACCAAGAGATGTGCTTTTAGAGACATCGCATCCAGCAACCTGTTTCTCAGTCCTGTGGGTCTAATAGTTGCTTCACAAGCCACAAGAAAGTGAGGATAAACGCAACAATGGAAAGTACCTCCGCACTGTACTTCATCCTCTCTGTATCCCTTCCATCGGTGTGATTTGTCCAGAGATCTTTCCTAAGAGGAAATCCCAGAGAAGCAGGAGAAAGAGAAAGAAATGGCTGGTGCTCAGACACTGTTGACGTTCAGGGATGTGGCCATAGAATTCTCCCTGGAGGAGTGGAAATGCCTGGACCCTGCTCAGCAGAATTTGTACAGGGATGTGATGTTGGAGAACTACAGAAACTTGTTCTCCATTGGTCTCACTGTCTCTAAGCCAGGCCTGATCACCTGCCTGGAGCAAAGAAAAGAGCCCTGGAATGTGAAGAGACAGGAGGCAGTAGACGGACATCCAGagatgggatttcaccatgctactcaggcttgtctcgaactcctgggctcaagcgatctgcccgcctcagcctcccaaagtgctgagattacaggtgtgaaccactgtgcccagcctgccctcaaggtttctgtggacaaattcactgCTATGTCTTCTCATGTTACCCAAGACCTTTTGCCAGAGCAGGGCATACAAGATGCGTTCCCAAAATCAATACTGAGAGGATATGGAAATTGTGGCCTTGATAATTTACATTTAAGGAAAGACTGGGAAAGTTTAAATGAGTGTAAGTTGCAAAAAGATTATAATGAACTTAACCAATGTTCATCAACTACCCATAGCAAAATCTTTCAATGTAATAAATATGTTAAAATCTTTAATAACTTTTCAAATTTGCATAGACATAATATAAGTAATACTGGAGAGAAACCTTTCAAATGTCAAGAATGTGGCAAATCCTTTCAAATGTTCTCATTCCTAACTGAACATCAGAAAATTCACACTGGAAAAAAATTCCAAAAATGTGGAGAATGTGGCAAAACCTTTATCCAGTGCTCACACTTTACTGAACATGAGAACATTGACACTGGAGAGAAACCTTACAGATGTCAAGAATGTGACAAAGTTTTTAAAACTTGCTCAGTCCTTACTAAAAATAGAATTTACGCTGGAGGGGAACATTACAAATGTGAAGAATTTGGCAAAGTATTTAACCAGTACTCCCACCTTACTGAACATGAGCGTGGTACTGAGGAAAAACCCTGCAAATATGAAGAGTGCAGCAGTGTCTTTATATCTTGCTCAAGCCTTTCTAATCAACAGCTGATTCTTGCTGGAGAGAAGCTCTCCAAATGTGAAACATGGTACAAAGGTTTTAACCACAGCCCAAATCCTTCCAAACATCAGAGAAATGAGATTGGAGGGAAACCTTTCAAATGTGAGGAATGTGACAGCATCTTCAAATGGTTCTCAGACCTTACTAAACATAAGAGAATTCACACTGGTGAGAAACCATACAAATGTGAAGAATGTGGGAAAGCCTATACGCAGTCCTCACACCTCAGTGAACACAGGAGGATTCACACCGGAGAGAAACCCTACCAGTGTGAAGAATGTGGGAAAGTCTTCAGAACTTGCTCAAGCCTTTCTAATCACAAGAGAACTCATTCTGAAGAAAAACCCTACACGTGTGAAGAATGTGGCAACATCTTTAAGCAGTTATCAGACCTCACTAAGCATAAGAAAACCCATACTGGAGAGAAACCCTACAAATGTGACGAATGTGGAAAGAACTTTACCCAGTCCTCAAACCTTATTGTACATAAGAGAATTCATACTGGAGAGAAACCCTACAAGTGTGAAAAGTGTGGCAAAGCCTTCACCCAGTTCTCACACCTGACTGTACATGAAAGCATTCATACTTGAGAAAAAAATAAAAATAAAAATAGGCACAGCCTTTAGTATCTGCTCGCATCCTACTTTACATCAGTTTGGACGTAACAAAGTTATTATAAATTTAATTACTATTGAAAGACCTTTCATGAAATATAAGTCTCCAGAGCACACAAGAGTATTTCTTCTGAAAAAAAAAGTTACAATTATGTTTTATACTAGATGGAAGACATGCAACAGTTGCTTAAACTTCCAGAGAATTTGTAGAGAAACCCAACAAATATCATAACTGTGGAATAACATTTGTTCAAAAACGATAGCTTAGAAAACATCAGAGTTCATACTAAAAGATATTTTGCAAATACAGTAAATGGGAAACATAAGCAAAATTCAATTTAAGTAAACATTGGAGGATTTGAAGAAGAGAGGAACAGAGCACGGACGCGTTCTAAGTAAACACTGGAGGATTTGAGGAAGAGAGGAACAGAGCACGGACACGTTCGGAAACGACAGTGAATCCGTGTGTTGAGTCTACAGGGACATCTCGACTTGAAGTAGATCGTTCATTCTTATTTAAGTTTAAAAGGAGGATGAGACTGAGTTTTTGTAGAGTTATAATTACATTCAAAATACACGTTTTTGCATTGAAAAATGTTAAATTTTTGAAAAGCGAATATTGATGTCTTTTAATCCTCGAATCAGTTCATGCTGTGTCTTCATTTCTGGTGCTGATGTGAAAACACATGGTCAGTTGTTGCTGCATCAGAGATGTGAGAAATTCTCTTCTGTTAGGTGTGCATCACTGATATACTTGTCCATGAAAGGTGAAAGACACTGAAATGTAAGATGCGTGAGTAAAATCTTGGTAGAGGC

Publications

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