Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name RPS3P7
Plot displaying the genomic locations of a retrocopy (in chr5) and its respective parental gene (in chr11). Each line represents a retrocopy.
Species Callithrix jacchus
Coordinates chr5:31878197-31878448  UCSC
Strand +
Parental Sequence XM_003734170.4
Parental seq. overlap 214 bp
Parental seq. overlap (%) 22.7%
Genomic Region Intragenic (RALGAPB)
Retrocopy Summary RPS3P7, located on chr5:31878197-31878448, is a retrocopy of the parental gene RPS3. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPS3
Full Name N/A
Also known as -
Coordinate chr11:63474377-63480460
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Green monkey Chlorocebus sabaeus RPS3P1
Baboon Papio anubis RPS3P8
Golden snub-nosed monkey Rhinopithecus roxellana RPS3P8
Mouse lemur Microcebus murinus RPS3P6
Pig Sus scrofa RPS3P5
Dolphin Tursiops truncatus RPS3P6
Horse Equus caballus RPS3P5
Pale spear-nosed bat Phyllostomus discolor RPS3P3
Velvety free-tailed bat Molossus molossus RPS3P4
Greater horseshoe bat Rhinolophus ferrumequinum RPS3P4
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPS3P7
GGGCTACGAGGTCATGGTGTCAGGGAAACTGAAGGACAGAGAACTAAATCCATGAACTTTGAGTATGATCTGATGATCCACAGCAGGGACCCTATTAGCTACTATGTTGATACCATCATCCATGTGCTTCTCAGACAGGGTGGGCTGGGCATCAGAGTGAAGATCATGTGTCCTGGGACCAAGTGATAAGATTGGTCTTAAGAATCCCCTGCCTGATCATGTGAGCACTCTGGACCCTAAAGATGAGATACT
>XM_003734170.4
CTACATTTCCCATGAACACCCACAGGCGTCCACGTAGCGCCGCCGTAGGTCGTCGCTCGCGCCCTTTTACCCATTTCCGCCCGAGagccatttcctttcctttcctttcggCGGAGTGTGGCGGCAAGATGGCTGTGCAAATTTCTAAAAAGAGGAAGTTTGTCGCTGATGGCATCTTCAAAGCCGAACTGAATGAGTTTCTTACTCGGGAGCTGGCTGAAGATGGCTATTCCGGAGTTGAGGTCCGAGTTACACCAACCAGGACAGAAATCATCATCTTAGCCACCAGAACACAGAATGTTCTTGGTGAGAAGGGCCGGCGGATTCGGGAGCTGACTGCTGTAGTTCAGAAAAGGTTTGGCTTTCCAGAGGGCAGTGTAGAGCTTTATGCTGAAAAGGTGGCCACTAGAGGTCTGTGCGCAATTGCTCAGGCAGAGTCTCTGCGTTACAAACTCCTAGGAGGGCTTGCTGTGCGCAGGGCCTGCTATGGTGTGCTGCGGTTCATCATGGAGAGCTCGGCCAAAGGCTGCGAGGTTGTGGTGTCTGGGAAACTCCGAGGACAGAGGGCTAAATCCATGAAGTTTGTGGATGGCCTGATGATCCACAGCGGAGACCCTGTTAACTACTACGTTGACACTGCCGTACGCCATGTGTTGCTCAGACAGGGTGTGCTGGGCATCAAGGTGAAGATCATGCTGCCCTGGGACCCAACTGGTAAGATTGGCCCTAAGAAGCCCCTGCCTGACCATGTGAGCATCGTGGAACCCAAAGATGAGATACTGCCTACCACCCCCATCTCAGAACAGAAGGGTGGGAAGCCAGAGCCGCCTGCCATGCCCCAGCCAGTCCCCACAGCATAACAGGGTCTCCTTGGCAGCTGCATTCTGGAGTCTGAATGTTGCTCTGTAAcgatctttaataaaatactgtacAAAAGACA

Publications

PMID - Link Title