Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPS3P3
Plot displaying the genomic locations of a retrocopy (in scaffold_m19_p_10) and its respective parental gene (in scaffold_m19_p_6). Each line represents a retrocopy.
Species Phyllostomus discolor
Coordinates scaffold_m19_p_10:16017803-16018038  UCSC
Strand -
Parental Sequence RPS3_x1
Parental seq. overlap 200 bp
Parental seq. overlap (%) 27.2%
Genomic Region Intragenic (RALGAPB)
Retrocopy Summary RPS3P3, located on scaffold_m19_p_10:16017803-16018038, is a retrocopy of the parental gene RPS3. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPS3
Full Name N/A
Also known as NULL
Coordinate scaffold_m19_p_6:118738445-118743879
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPS3P2
Chimpanzee Pan troglodytes RPS3P8
Bonobo Pan paniscus RPS3P8
Gorilla Gorilla gorilla RPS3P9
Orangutan Pongo abelii RPS3P7
Gibbon Nomascus leucogenys RPS3P8
Green monkey Chlorocebus sabaeus RPS3P1
Crab-eating macaque Macaca fascicularis RPS3P6
Rhesus Macaca mulatta RPS3P6
Baboon Papio anubis RPS3P8
Golden snub-nosed monkey Rhinopithecus roxellana RPS3P8
Marmoset Callithrix jacchus RPS3P7
Mouse lemur Microcebus murinus RPS3P6
Pig Sus scrofa RPS3P5
Dolphin Tursiops truncatus RPS3P6
Horse Equus caballus RPS3P5
Velvety free-tailed bat Molossus molossus RPS3P4
Greater horseshoe bat Rhinolophus ferrumequinum RPS3P4
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPS3P3
GGAGAGCCTGCTGTGGGGTACTGCAGTTCATCATGGAGAGTGGGGCCAGGACCTACAAGGTCATAGGGTCAGGGAAACTCCAAGGGCAGAGGGTTGGATCCATTAAGTTTGTGGATGGTCTGATGATCTACAGTGGGAACCCTGTTAACTATATCAATACCACTGTGTGCTATGTGCTGCTCAGGTAGGGTGTGCTGGGCATCAAAGTGAAGATCATGCTGTCCTGGGACCCAAGT
>RPS3_x1
ATGGCTGTGCAAATTTCCAAGAAGAGGAAGTTTGTGGCTGATGGCATCTTCAAAGCCGAACTGAACGAGTTTCTCACCCGAGAACTGGCTGAGGATGGCTACTCTGGAGTTGAAGTCCGAGTTACGCCAACCAGGACAGAAATTATTATTTTGGCCACCAGGACGCAGAACGTTCTCGGTGAGAAGGGCCGACGGATCCGGGAATTGACTGCTGTGGTTCAGAAGAGGTTCGGCTTCCCTGAGGGCAGTGTAGAGCTTTATGCTGAGAAGGTGGCCACAAGAGGGCTGTGTGCCATTGCCCAGGCAGAGTCTCTGCGCTACAAACTCCTGGGAGGCCTTGCTGTGCGGAGGGCCTGCTATGGTGTGCTGCGGTTCATCATGGAGAGTGGGGCCAAAGGCTGCGAGGTCGTGGTGTCTGGGAAACTCCGAGGACAGAGGGCTAAGTCCATGAAGTTTGTCGATGGCCTGATGATCCACAGTGGGGACCCTGTTAACTACTATGTTGACACCGCCGTGCGCCATGTGCTGCTTAGGCAGGGTGTGCTGGGCATCAAAGTGAAGATCATGCTTCCTTGGGACCCAAGCGGGAAGATAGGCCCCAAGAAGCCCCTGCCTGACCACGTGAGCATTGTGGAACCCAAAGACGAGATCCTGCCCACCACCCCCATCTCGGAACAGAAGGGCGGGAAGCCAGAGCCGCCTGCCATGCCCCAGCCAGTGCCCACAGCGTAA

Publications

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