| Retrocopy Name | Klf16P1 |
|
| Species | Rattus norvegicus | |
| Coordinates | chr4:58249681-58249897 UCSC | |
| Strand | - | |
| Parental Sequence | NM_001127604.1 | |
| Parental seq. overlap | 182 bp | |
| Parental seq. overlap (%) | 7% | |
| Genomic Region |
Intergenic |
|
| Retrocopy Summary | Klf16P1, located on chr4:58249681-58249897, is a retrocopy of the parental gene Klf16. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
| Gene Name | Klf16 |
| Full Name | KLF transcription factor 16 |
| Also known as | - |
| Coordinate | chr7:12006710-12016529 |
| Strand | + |
| Gene summary | Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within dopamine receptor signaling pathway. Orthologous to human KLF16 (Kruppel like factor 16). [provided by Alliance of Genome Resources, Apr 2022] |
| >Klf16P1 |
| CAAAGCCTATTACAAGTCTTCGCACCTCAAGTCACACCAGCGTACCCACACGGGGGAGCGCCCGTTCTCCTGCGATTGGCTCGACTGCGACAAGAAGTTTACGCGTTCAGACGAGCTGGCCCGCCACTACCGGACCCACACCGGTGAAAAGCGCTTCTCCTGCCCGCTGTGCCCCAAGCAGTTCTCCCGGAGCGACCACCTGACCAAGCATGCCCGT |
| >NM_001127604.1 |
| CGCTGCCGGCCGGACGGGCGTAGGTCCCGCCGCCTCCGCCTCTCTCCCGCCGCGGATCCCGTGCCTCCGCGTCCTTGCCCGGCATGTCGGCGGCCGTGGCGTGTGTGGATTACTTTGCCGCCGACGTGCTCATGGCCATCTCTTCGGGAGCCGTGGTGCATCGCGGGCGACCCGGCCCCGAGGGCGCGGGCCCCGCTGCCGGCCTGGATGTGCGCGCCACGCGCCGCGAGGCCACGCCGCCGGGGACCCCTGGGGCACCGCCACCGCCAGCCACCGCTCCGGGGTCGGGAGGCGCCACCGCTGCGCCCCACCTGCTGGCCGCCAGCATCCTGGCCGATCTGAGAGGCGGGCCGGGAGTCGCCACAGCAGCCAACACCGCGGGGGGCACCtctccggtctcctcctcctcggccgcttcgtctccgtcttcgGGCCGCGCCCCCGGCGCGGCCAAGAGCCACCGCTGTCCCTTCCCAGGCTGCGCCAAAGCCTATTACAAGTCTTCGCACCTCAAGTCACACCTGCGGACTCACACAGGTGAGCGGCCCTTTGCCTGTGATTGGCCTGGCTGTGACAAGAAGTTCGCCCGTTCCGATGAGCTGGCCCGCCACCACCGGACGCACACAGGCGAGAAGCGCTTCCCCTGTCCCCTGTGTACCAAGCGCTTCACCCGCAGCGACCACCTGACCAAGCACGCCCGGCGGCATCCTGGCTTCCGCCCGGAACTACTGCGACGACCTGGTGCCCGCAGCGCCTCGCCCAGCGACTCGCTGCCCTGCAGCTTGGCTGGcagccccacacctagccctgtccccagcccagctccggccGGCTTGTAGAGCCCTGACCTGTCCACCCTGAGTGGCCTGCTTGCCAGGCCTCAGCAGGGATTTCCGTCGAGGATGTCTGTCCTCTGGAGAGCCTGTCCGGGAGTTCCAGCCCACCTCAAGGAAGCAGCGAGGGGACCAAGAATGGACTTGGGTCACCTGGGGGGCTTGGGAGGTGGCTGGCCTCAGGTTCTGTCTGTAAATAGCCATGGTTAACTGTCTTGTCCCCTCTGCAGGGACCCCCAAATGGGCAGTTGGCAGGTCCTCCTTACCCCTTCTGCCACCCTCTGCTTTCCCTGCTGGGTGGCACCGGGCATGAAGCCCAGTCCCACTCCTCGTCTTCAGCCCCCTAGTCACCCCTCCAGGTTGGGACACAGGTACACAGAGCCATAGGTGACTGGGGCTTCCCATGGGCCCCGACCTGTCCCCGCTCCACTGAAAGCCATTGGCGGAAGTTCAGGGAAATGGGGGGGTGTGCAGCCTGGCTGACCCCCTTCCATGGGTACTCAAATCTCAGGTGTCCATAGGTTCTGCCCTCAATAAGGGCCCCCCGACTCCCAGCCCCAGGGGTACAGGAGGTGCCACAGTTTTCAGAGAACTTAGGGCTGTGGGGTGCAGGTGGAGGCCCCCTCAGAGCAGCACCACTCACTCAGCTCGGGTGTGGTGCTGGGCAGGTGGTAAAGAAATTATTTATTGTCCTCTCTGACTGCTGGTATGGGGGCCTGGCTCTCCTATCTGGGTGTGCATATGTGTGAGAGAGACAGTGGGTGTCTGGTGCCTGGGGCTTAGCCTCCCTTCTCCCACTGGGTTAGGGTCCCTGAGTTTGGCCTTTGTGGCAATGCGTCTCAGACAATCTTCTGTAGGACCCCTGTGGCCATTGGGCTACAGATATAGGGCTCTGGCCTTTGTGTGCTCTTCACTCTTGGGTGTCTGCAGAGGGTGGCCTTGGACTCCAGGATTGGGAACGGGGCATCCAGCCCCTGGGCCTTCTGGGGTAGCTCGGGTTTCTTTTTGCACATGATAGACTTTTTTTCAGGCTCGAGTTCCATGTTCAGTGGGGTCCCCTTGTGTGGCCATCATCCTCAGGGGTATGAGTGGGGGGAGGTCTCAGAAGTGTCCCCAGTAGGGTCCTCTCCTACTGCAGTTTGGAGATCTTTTCTAGAAAGGCAATTAGGGGCTCTCCTCCACACACACCAAGGAGTTGGGGACACAGAAAGTCGAGCTGCCCTGTGTTGGCTGTGGGAGGTTACTGGCATTTCAGAACCTTCCAAAATGCAATGAGGGAGGCTTTGGGTATTGCTACCTTTACCTGAGCCTGCGTGGAGGGAGGTCACCCTTCTGGAGCTGGGCTCGAAGGGTCCTGGGCCAGCTCCCCTCCCAGGAACTTCCATTGGCCCCACAGAAATGAGATGCCTTAGTTTGCGGGGTGGGTCGGGGGCTGGGGCCCCATTCTTTTTGTGTCTTTTGGATGTATCTTGCTTCATCCCAGCTCCTGCTGGTCTGTCCCTCCTGTAACCGGGAAAGGTCTGGTCTTTGGCAGTTAACTCCATAAGCAACCAGAGTTTTGTCCTGGTGTCCTTTCCCTCCCCCCTAACTTCAGGTTCTGATTGATAACTGGGACTTGGGTCTAACCATTGAAGGGTGATGTCTGCAGGGCAGGCAGGACAAGGGTCCTAAGGGATTTGTTTGTTCTTTCTGTAGGGGGCACCTCTCCGACATTCCGCCTGGCCTCTCACCCATGTATTTAATTAAAGAAGCCCTTTTTAAAAA |
| PMID - Link | Title |
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