Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name KLF16P1
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Plot displaying the genomic locations of a retrocopy (in chr3) and its respective parental gene (in chr19). Each line represents a retrocopy.
Species Macaca mulatta
Coordinates chr3:157031244-157031504  UCSC
Strand -
Parental Sequence XM_015122393.2
Parental seq. overlap 214 bp
Parental seq. overlap (%) 7.4%
Genomic Region Intergenic
Retrocopy Summary KLF16P1, located on chr3:157031244-157031504, is a retrocopy of the parental gene KLF16. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name KLF16
Full Name N/A
Also known as -
Coordinate chr19:1669138-1680666
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens KLF16P1
Chimpanzee Pan troglodytes KLF16P1
Bonobo Pan paniscus KLF16P1
Gorilla Gorilla gorilla KLF16P1
Orangutan Pongo abelii KLF16P1
Gibbon Nomascus leucogenys KLF16P1
Green monkey Chlorocebus sabaeus KLF16P1
Golden snub-nosed monkey Rhinopithecus roxellana KLF16P1
Marmoset Callithrix jacchus KLF16P1
Mouse lemur Microcebus murinus KLF16P1
Mouse Mus musculus Klf16P1
Rat Rattus norvegicus Klf16P1
Pig Sus scrofa KLF16P1
Cow Bos taurus KLF16P1
Sheep Ovis aries KLF16P1
Dolphin Tursiops truncatus KLF16P3
Horse Equus caballus KLF16P2
Cat Felis catus KLF16P1
Pale spear-nosed bat Phyllostomus discolor KLF16P1
Velvety free-tailed bat Molossus molossus KLF16P1
Greater mouse-eared bat Myotis myotis KLF16P1
Kuhl's pipistrelle Pipistrellus kuhlii KLF16P2
Greater horseshoe bat Rhinolophus ferrumequinum KLF16P1
Egyptian rousette Rousettus aegyptiacus KLF16P2
Sloth Choloepus didactylus KLF16P2
Crab-eating macaque Macaca fascicularis Without Homology
Baboon Papio anubis Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

This retrocopy transcript is not present in the database for expression quantification

Related Sequence

>KLF16P1
GCCAAGCGCCACCAATGCCCCTTCCCGGGCTGCAACAAAGCCTATTACAAGTCGTCGCACCTCAAGTCTCACCAGCGTACCCACACGGGTGAGCGTCCTTTCTCCTGCGACTGGCTCGACTGCGACAAGAAGTTTACGCGTTCCGACGAGCTGGCCCGCCACTACAGGACGCACACGGGCGAGAAGCGCTTCTCCTGCCCCCTCTGCCCCAAGCAGTTCTCCCGGAGCGACCACCTGACCAAACACGCTCGCCGCCACCCA
>XM_015122393.2
CCGGACGGGCGCCGCTCCCGCCGCCTCCGCTCCGCCCGCCGCGCCGCGCGCCCTTGCCCGGCATGTCGGCGGCCGTGGCGTGTGTGGATTACTTCGCCGCCGACGTGCTCATGGCCATCTCCTCGGGCGCCGTGGTGCACCGCGGGCGGCCCGGCCCCGAGGGCGCGGGCCCCGCCGCTGGCCTGGATGTGCGCGCGGCGCGCCGCGAGGCCGCCTCGCCCGGGACCCCGGGGCCGCCCCCGCCGCCTCCCGCCGCCCCTGGCCCGGGCCCTGGCGCCGCCGCGGCGCCCCACCTGCTGGCCGCCAGCATCCTGGCCGACCTGCGCGGCGGGCCCGGAGCCGCCCCGGGGGGCGCCTCGCCCGCCTCCTCCTCCTCAGCCGCCTCGTCCCCGTCCTCGGGCCGCGCCCCCGGCGCCGCGCCCTCCGCCGCCGCCAAGAGCCACCGCTGTCCCTTCCCGGACTGCGCCAAAGCCTACTACAAGTCCTCGCACCTAAAGTCGCACCTGCGGACGCACACAGGGGAACGCCCTTTTGCTTGTGACTGGCAGGGCTGTGACAAGAAGTTCGCCCGCTCTGACGAGCTGGCCCGCCACCACCGGACACACACGGGCGAGAAGCGCTTCTCCTGCCCTCTGTGTTCCAAGCGCTTCACCCGCAGCGACCACCTGGCCAAGCATGCCCGCCGCCACCCCGGCTTCCACCCGGAcctgctccggcgccctggtgcccgcagtacctcccccagcgactcgctgccctgcagcctggccgggagccctgcgcccagccccgcgcccagcccagcccccgcaggcctgtagggccctcgtccagcccaccctgaccaCCAGGATGCTTCTGCCATCCAGGGGTGTAGTGAGGACCCACGGGGAGCCCAGTCCCCTTCCAGCTGTGGGCAAACCCTGAAGACACCCCTGCCCCCCTCCAGAGAGCAAGGAGGGGGCCTGAGACTGGACCCGGGTCTGCCTGACCTCAGAGGTGGCTCTCAGGACGGGTGACGGGGGCTTGTGTTTGTAAATAGCCATGATACTAACTTTCTTCCCATCTGTGCAACGGGGCCCCCCCGGGGCAGCTAGGAGGTcctcccctctcctctccaccaccccctgctgcccccctcccGGGGTGGGGTTTGCGGGGGTGGAGTGGACTTCTGGGAGCTGGCCCAGGGAAGGCACCCCCTGCCCCATCCCTGCAGGTTGGGATGAAGCGTGCAGACAGCCATAGAGGAGCTGGGGGTTGACACGGCCCCTGCCTCTCCCCACCCTACCCCACCCCACCGAAAGCCATGGGAGTAGTTCAGGGAAACGGGGGTGCAGCCCGGCCGCCCCCCACTCGGGTACTCAATCTCAGGTGTCCACAGGTTCTGCCCACGTTAGGGGCTGCCCATCCCCCCAGACCTCGGGGGTAGAGCCAGGAGCGGGGAGACGTTAGGATGCCCGGAGGGGCTCCAGGTCTTGCTTCTGAGACCTGCGATGGGGAGGGAGGGGACCTCTGGGTTCTTCCAAAGAACATTTGACTCAGTGGAGGTTGGGAGGTGGGAGGCGGATATCGGGGTCAGGAGGGAATGCCGGCTTATTTATTTTCCTCTCTCCTCCGGTGTGGGGCCCTAGCTCCCCCTCTCTGGGTGGGTGGGAGAGAGAGGCTGCAGGGGAGGGTGGCACTGGGCCTGGCCCTCCAGCCCGTGCCCTGCCGACTTTGGCCTTTGCGGTATCACGTGACAATCAACTCCCTTAAGGACGCCTGCAGCCATTGGGCCGCACTGCCCTCCCTGGCCTGCAGGTGGGGCCGTAGAGCCCATGCCCACCGGGGTTGCAGGCTCTTCCGGGCGTGGGCTGCAGCCTGGCCAGGCCCTGCTTCCCCCACCTCCCCTCCTTCTCCTGGGTGCCTGGAAGAGGTGGGCCCTGGCCCATGGTCGAGGTCCTGCCTCATGGACTGGAAACAGAGGGCTGGCTGTGCAGCCTCCTGGGGTAGTTCGTTTTTTTTGCACCGGGTAGAATATTTTTTCAGGCACGGATTCCTTTTTTCTGGGCCCCCGTGGGTGGTCCGGCATCCTCAGGGGGTGTGAGTGTGTGTGTGGGGGGGTCTCTGAGCTGAACTTGGGTGGGTGGGGACTTGTCCCTCGGGGGCCACCTTCGTGTCCTTGCCAGGGGTCGTCCTGCTGTGGCCTGGGTTGCATTTCCTCTTGGGGGGTATTGAGGACCCCCCCAGCCCGGAATGAGAAGGGTCCTAGGTTCCACGTCCAAGACCCGGAAAGGTGAATCCCCTCACTGTTGGCTGCAGGAGGTTTTTGGTACCCCCTTTTGTTCCAGAACCTTCCTGCATCTCGCTTGGGGGCAGGGGGGCTTCGGATGGCCACTGGTGTGCACCTGGACCCAGCCCCGGCCTGGCAGGATCCAGGGATGGGTGCCTGGGGTCCTGCGGGCAGGGAGGCAGGGGACGCCCTTCTGGAGCTGGGCTCGGAGGGTCTGCCCCATCCAGCCCTAGGCTCTCTGTATTCTCTGTCCCCAGCCTCAAACCCTCCTCTGGCAGCGCTAGTGAGATGCCTTAGTGTGTGGGGGTGGGTGGGGGACTGGGGCCCCGTTTTCCTTTAGTGTCTTGTTGGCCCCAGCCCTGGCCGGGGCCTGTCTGGAGCAGGGGTGGGTAGGGCTTTGGGTTCCATAACTCTCTAAGTGGGCCCCTCTCCAGTATCCAGGGGCCTGGAGAGACCTGCGCCCACCCCTCCACTCCCCCAGGAGCCGCTGGTCACTGGGACTTGGTTCCAGCCGTCTGCAGGGGAGGTGGCTCCAAGGGGCGTGTGCTTTCCGTGGGTGGCGCTCCTCCCCCACCCTGCCTGGCCTCATCCTTGTATTTAATTAATTAAACGAGCCCCTTTTTAAACCCTA

Publications

PMID - Link Title
No publications available for this retrocopy