| Retrocopy Name | Klf16P1 |
|
| Species | Mus musculus | |
| Coordinates | chr6:30934814-30935040 UCSC | |
| Strand | - | |
| Parental Sequence | NM_078477.2 | |
| Parental seq. overlap | 191 bp | |
| Parental seq. overlap (%) | 7.2% | |
| Genomic Region |
Intergenic |
|
| Retrocopy Summary | Klf16P1, located on chr6:30934814-30935040, is a retrocopy of the parental gene Klf16. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
| Gene Name | Klf16 |
| Full Name | Kruppel-like factor 16 |
| Also known as | BTEB4|DRRF |
| Coordinate | chr10:80402955-80413130 |
| Strand | - |
| Gene summary | Enables DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II. Acts upstream of or within dopamine receptor signaling pathway and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Is expressed in several structures, including brain; embryo mesenchyme; genitourinary system; gut; and retina. Orthologous to human KLF16 (Kruppel like factor 16). [provided by Alliance of Genome Resources, Apr 2022] |
| >Klf16P1 |
| CCTTCCATGGCTGCAACAAGGCCTACTACAAGTCGTCGCACCTCAAGTCACACCAGCGTACCCACACGGGGGAACGCCCCTTCTCCTGTGATTGGCTCGACTGCGACAAGAAGTTTACGCGTTCTGATGAGCTAGCCCGCCACTACAGGACGCACACCGGTGAAAAGCGCTTCTCCTGCCCGCTGTGTCCCAAGCAGTTCTCTCGGAGCGACCACCTGACCAAGCAT |
| >NM_078477.2 |
| GCACTCTAGCAGCCGCTGCCGGCCGGACGGGCGTAGGTCCCACCGCCTCCGCTTCTCTCCCGCCGCCGATTCCGTGTCTCCGCGTCCTTGCCCGGCATGTCGGCGGCCGTGGCGTGTGTGGATTACTTTGCCGCCGACGTGCTCATGGCCATCTCCTCGGGAGCCGTGGTGCATCGCGGACGACCCGGCCCCGAGGGCGCGGGCCCCGCTGCCGGTCTGGATGTGCGCGCCACGCGCCGCGAGGCCACGCCGCCGGGGACCCCTGGGGCACCGCCACCGCCAGCTACGGCTCCGGGGCCGGGAGGCGCCACCGCTGCGCCCCACCTGCTGGCCGCCAGCATCCTGGCCGATCTGAGAGGCGGGCCGGTAGTCGCCACCGCAGCCAGCACCGCGGGGGGCACCTCTCcggtctcctcctcctcagccgCTTCGTCTCCCTCTTCGGGCCGCGCCCCCGGCGCCGCCAAAAGCCACCGCTGTCCCTTCCATGGCTGCGCCAAAGCCTATTACAAGTCTTCGCACCTCAAGTCACACCTGCGGACTCACACAGGTGAGCGGCCCTTTGCCTGCGACTGGCCTGGCTGTGACAAGAAGTTCGCCCGTTCTGATGAGCTGGCCCGCCACCACCGGACGCACACCGGGGAGAAGCGCTTCCCCTGCCCCCTGTGTACCAAGCGGTTCACCCGAAGCGACCACCTGACCAAGCACGCCCGGCGACATCCCGGCTTCCGCCCGGAACTCCTGCGACGACCTGGTGCCCGCAGCGTCTCGCCCAGCGACTCGCTGCCCTGCAGCTTGGCTGGAAGCCCCACACCTAGCCCTGTCCCCAGCCCAGCTCCTGCTGGCTTGTAGAGCCCTGACGTGTCCACCCTGAGTGGCCTCCTTACTGGGCCTCAGCAGGGATTTCTATCAAGGGACACATCTGTCCTCTGGAGAGCCTGTGTCCTGGAGTTCCAGCCCACCTCAAGAAAGCAGCAAGGGGACTGAGAATGGACTTGGGTCACCTGGGGGGCCTGGGAGGTGGCCTCAGGTTCTGTCTGTAAATAGCCATGGTTAACTGTCCTGTCCCCTCTGCAGGGACCCCAAATGGGCAGTTGGCAGGCCCCCCCATCCCTTCCTGCCACCCTCTGCTTTCCCTCCTGGGTGGCGTTGGGCATGAAGCCTACCCCACTCCTTGTCTTCAGCCCCCTAGTCACCCCTCCAGGTTGGGACACAGGTACACAGAGCCATAGGTGACTGGGGCTTCCCATGGGCCCCTACCTGTCCCCACTCCACTGAAAGCCATTGGCGGAAGTTCAGGGAAATGGGGGGGGTGCAGCCTGGCTGACCCCCTTCCATGGGTACTCAAATCTCAGGTGTCCATAGGTTCTGCCCTCAATAAGGGCCCCCCACTCCCAGCCCCAGGGGTACAGGAGACCCACAGTTTTCAGAGAACTTAGGGCTGTGGGGTACAGGTGGGGCACGTGGAGGTGCATCCCCCACATCCCCGCTCACCTTGGGTGTGGTGCTGGGCAGATgggaaagaaattatttattgTCCTCTCTGACTGCTGGTGTGGGGGGGCCTGGCTCCCCCTATctgggtgtgcatatgtgtgagagagacagtggGTGTCTGGTGCCTGGGGCTTAGCCTCCTTACTCCCACTGGGTTAGGGTCCCTGAGTTTGGCCTTTGTGGCATTGCGTCTCAGACAATCTATAGGACCCCTGCGGCCATCGGGCTATGGATACAGGGCTCTGGTCTGCCGTCATGTGCTCCACACTCTCGGGTGTCTGCAGAGGGTGGCCTTGGACTCCAGGATTGGGAACAGGGCGTTCAGCTCCTGGACCTTCTGGGGTAgctcgggttttttttttttttgcacaggatagatttatttttttcaggcTCTGAGTTCCATGTTCCAGTGGGGGTCCCCTTGTGTGGCCGTCATCCTCAGGGGTGAGTGGGGAAGGTCTCAGGAGAGTCTACAGTAGGATCCTCTACTACTGCagactggatttcttttctagAAAGGCAATTAGGGattgccacacacacaccaagaaattGGGGACACAGAGAAAGTTGAGCTGCCCTGTGTTGGCTGTGGGGGGTTTACTGGCATTCCCATTTGTTCCAGAATCTTCCATCATGAAATGAGGGAGGCTTTGGGTAATGCTACCTTTACCTGAGCCTACATGAGGGAGGTCACCCTTCTGGAGCTGGGCTGAGGGCCCTGGGCCAGCTCCTCTCCTGGGTACTTCCATTTGCCCCTTCTCTTTGGCCACAGAAATGAGATGCCTTAGTTtgcagggtgggtggggggctggggccaattctttttgtcttttggaTGTATCTTGCTTCATCCCAGCTCCTGCTGgtctcctgtccttcctgtaaacAGGGGGAAAGGACTGAGGTTCTTAGGAGTTAACTCCATAAGCAATCAGAGCTTTTCCGTGAtgtcctcccccagccccccaacTTCAGGTTCTGATTGATAACTGGGACTTGGGTCTAACCATTGAAGGGTGATGAACGCAGGGCAGGCAGGACAAGGGTcctaagggatttatttgttctttctgtAGGGGGCACCTCTCCTCCATTCCGCCTGGCCTCTCAcccatatatttaaattaaagaaGCCCTTTTTAAAAACCT |
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