| Retrocopy Name | LOC108348096P1 |
|
| Species | Rattus norvegicus | |
| Coordinates | chr5:104941451-104942208 UCSC | |
| Strand | + | |
| Parental Sequence | XM_017602275.1 | |
| Parental seq. overlap | 640 bp | |
| Parental seq. overlap (%) | 15.8% | |
| Genomic Region |
Intergenic |
|
| Retrocopy Summary | LOC108348096P1, located on chr5:104941451-104942208, is a retrocopy of the parental gene LOC108348096. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
| Gene Name | LOC108348096 |
| Full Name | N/A |
| Also known as | NULL |
| Coordinate | chrX:19336382-19369872 |
| Strand | - |
| Gene summary | N/A |
| Species | Scientific Name | Retrocopy | |
 |
Human | Homo sapiens | RRAGA |
 |
Chimpanzee | Pan troglodytes | RRAGBP1 |
 |
Bonobo | Pan paniscus | RRAGBP1 |
 |
Gorilla | Gorilla gorilla | RRAGBP1 |
 |
Orangutan | Pongo abelii | RRAGBP1 |
 |
Gibbon | Nomascus leucogenys | RRAGBP2 |
 |
Green monkey | Chlorocebus sabaeus | RRAGBP1 |
 |
Crab-eating macaque | Macaca fascicularis | RRAGBP2 |
 |
Rhesus | Macaca mulatta | RRAGBP2 |
 |
Baboon | Papio anubis | RRAGBP2 |
 |
Mouse lemur | Microcebus murinus | RRAGBP1 |
 |
Mouse | Mus musculus | RragbP1 |
 |
Chinese hamster | Cricetulus griseus | Rragb_1P1 |
 |
Cow | Bos taurus | RRAGBP2 |
 |
Sheep | Ovis aries | RRAGBP1 |
 |
Dolphin | Tursiops truncatus | LOC109547242P2 |
 |
Panda | Ailuropoda melanoleuca | RRAGBP1 |
 |
Pale spear-nosed bat | Phyllostomus discolor | RRAGBP1 |
 |
Velvety free-tailed bat | Molossus molossus | RRAGBP1 |
 |
Greater mouse-eared bat | Myotis myotis | RRAGBP1 |
 |
Greater horseshoe bat | Rhinolophus ferrumequinum | RRAGBP1 |
 |
Egyptian rousette | Rousettus aegyptiacus | RRAGBP1 |
 |
Golden snub-nosed monkey | Rhinopithecus roxellana | Without Homology |
 |
Marmoset | Callithrix jacchus | Without Homology |
 |
Rabbit | Oryctolagus cuniculus | Without Homology |
 |
Pig | Sus scrofa | Without Homology |
 |
Horse | Equus caballus | Without Homology |
 |
Dog | Canis familiaris | Without Homology |
 |
Cat | Felis catus | Without Homology |
 |
Kuhl's pipistrelle | Pipistrellus kuhlii | Without Homology |
 |
Sloth | Choloepus didactylus | Without Homology |
 |
Tasmanian Devil | Sarcophilus harrisii | Without Homology |
 |
Opossum | Monodelphis domestica | Without Homology |
 |
Platypus | Ornithorhynchus anatinus | Without Homology |
 |
Chicken | Gallus gallus | Without Homology |
 |
Turkey | Meleagris gallopavo | Without Homology |
 |
Zebra Finch | Taeniopygia guttata | Without Homology |
 |
Budgerigar | Melopsittacus undulatus | Without Homology |
 |
Painted Turtle | Chrysemys picta | Without Homology |
 |
Lizard | Anolis Carolinensis | Without Homology |
 |
Frog | Xenopus tropicalis | Without Homology |
 |
Zebrafish | Danio rerio | Without Homology |
 |
Drosophila | Drosophila melanogaster | Without Homology |
| >LOC108348096P1 |
| TTGGGGAACCTGGTGCTGAACCTGTGGGACTGTGGCGGCCAGGACACCTTTATGGAAAATTACTTCACCAGCCAGCGGGACAACATCTTCCGTAATGTGGAGGTTCTGATCTACGTGTTTGACGTAGAGAGCCGCGAACTGGAAAAAGATATGCATTATTATCAGTCGTGTCTGGAAGCCATCCTCCAGAATTCACCTGATGCCAAAATCTTCTGCCTGGTGCACAAAATGGATCTGGTTCAGGAAGATCAACGTGACCTGATTTTTAAAGAGCGAGAAGAAGACCTGAGGCGTTTGTCTCGCCCGCTGGAGTGCGCTTGTTTTCGAACGTCCATCTGGGATGAGACGCTCTACAAAGCCTGGTCCAGCATCGTCTATCAGCTGATCCCCAACGTTCAGCAGCTGGAGATGAACCTAAGGAATTTTGCCCAGATTATTGAGGCTGATGAAGTTCTGCTGTTCGAGAGAGCTACGTTCTTGGTGATTTCCCACTACCAGTGCAAAGAGCAGCGAGATGTACACCGCTTTGAGAAGATCAGCAACATCATCAAGCAGTTTAAGCTAAGCTGCAGTAAATTGGCCGCTTCTTTCCAGAGCATGGAAGTGAGGAATTCTAACTTCGCTGCCTTCATCGACATCTTTACATCAAACACGTATGTGATGGTGGTCATGTCAGATCCATCCATCCCTTCTGCAGCTACTCTGATCAACATTCGTAATGCCAGGAAACACTTTGAGAAGCTAGAGAGAGTAGATGG |
| >XM_017602275.1 |
| CAATGGCGCGGAAATGAGAGCCCGAGCCACGTGATGGCGGGTGGCACTCTGGCTTTCCTAAAGCAGTCTCTATGGTATTCTTCCAAGCAAACCCAGGGCCCCCCCAAAAGGGTAGCGGCACGTGACAGGCCCTGGGACTACGGCAGGTTCCCACGTGATCCTGGCCTGCAGTAGCGTGGTTGCAGTGAGGTTCTTGCGCTCCTGAAGGGCGGGCGCGGAAGTAAGAGCATCCTCAGGCGGTCTGTGACTGGCAGCGAGGTCGAGAGGAGCCACCAGGCAGTGACCGCTTTGCTTCTGCAGCTCGGCTCAGCTCATTCCGTTATCTCAGCCTTTGCAGTCTGCACAGAAGCTGACCAAGTTACCTTTGGGTCTTGAGACCTGGGAGAGTGAGGCCCAAACTCGGGACCAACTCCTCATCTACCTTGCCCTCCCTCTCCTCCATCTCTTCCTTTGCATGCACGAATCGCTTGCTCCTTTGGGCTGGCTTGCTCGGCTGTGCCTGGAGACTAAGTTCGGGTCGGTAAAGGTAACTGTGGGAAAAGCGGCCCCCCAGTGGACAAAGGCGGAGGCAGGGATAGAGCAGGCCCCGCGGGCCCTGGGCGCTGAGCATAGGCAGTAGAGAAGGTGAGCCAGAAGAACAGTACTGCGGATTTAGAAGGCACTGTGAAGGACTTGTTGCGCGATGGAAGAATCTGACTCCGAGAAAAAGACGGAGAAAGAGAATGTGGGCCCAAAAGTGGAGCCTCCTCTAGGGGAGCCGGAAGGATCGCTTGGGTGGGCAATGCCAAATGCAGCCATGAAGAAAAAGGTGCTGTTGATGGGTAAAAGTGGATCTGGTAAGACCAGCATGAGGTCTATTATCTTTGCAAATTATATTGCCAGAGACACACGTCGTCTTGGTGCAACAATACTAGACCGTATACATAGTCTtcaaattaatagcagtttgagcacctactctctcgtagactctgttggaaatacaaagacatTTGATGTAGAACATTCTCATGTTCGATTTCTGGGAAACCTGGTTTTGAACCTGTGGGATTGTGGTGGACAAGACACCTTCATGGAAAATTACTTCACTAGCCAGCGTGACAACATCTTCCGAAATGTGGAGGTTCTGATTTATGTCTTTGACGTGGAGAGCCGTGAACTCGAGAAAGACATGCACTACTATCAGTCATGCCTTGAGGCTATTCTGCAGAATTCCCCAGAAGCCAAAATCTTTTGCTTGGTACACAAAATGGATTTGGTCCAGGAGGATCAGCGAGACTTGATTTTTAAAGAACGAGAAGAAGACTTAAGGCGTTTATCGCGTCCGTTAGAATGTTCTTGTTTCCGAACATCTATCTGGGATGAAACTCTGTATAAGGCTTGGTCCAGCATTGTTTATCAGCTGATTCCCAATGTTCAGCAACTGGAAATGAACCTGCGCAATTTTGCTGAAATTATTGAGGCTGATGAAGTACTTCTGTTTGAGAGAGCTACCTTTCTGGTGATTTCTCACTATCAGTGTAAAGAACAGCGAGATGCCCACCGATTTGAGAAAATCAGCAACATTATTAAGCAGTTCAAGCTGAGCTGTAGCAAGCTGGCTGCCTCTTTCCAGAGTATGGAAGTCAGGAATTCTAACTTTGCTGCTTTCATTGACATATTCACATCCAACACTTACGTCATGGTCGTGATGTCTGATCCATCCATTCCTTCTGCAGCTACTCTGATCAACATCCGCAATGCCAGAAAACACTTTGAAAAGCTGGAGAGAGTGGATGGACCAAAACAGTGTCTTCTCATGCGCTAAACATTGCCGAATATTGTTTCACACAAAATAATTGAAACACTGTTTCTTAATTTTATTGTATTCATATATGTAGGCTCTGAAATATTGTGATGCTCACTGCTTCTGTATTTCTTCTCTACTCTCCAGTCTTAACATTTATCTTTGAATGCTATTTATTCAAATAGCTTGAGGAGTTAGAAGATGAGGTGTCTATGAAGTTGATGTAACGTATACGTAGGCGATATATGTAAGTGTTCTGATAACATGATTCTAATGGTGTTTTAAGTGTTCTGATAACCTGCTTTTAATAGTTGTGTATGCCAAAGTCTTTCCCAGAACCTCTTGTATTCACTATCAAATATATACATGTAAGTTTTAAGTATTACTGTTTTCTCAGCATGAATTAAAAATATTCCGTAACTCaaccaggcaacgtagctcatgcctgtgaccccagcagttgagaagcagagacaagaggattgctgcaagtttgaggccagcctgtctacatagggaggtccaggccaagtatatatcaagatcttgtttcaaaaaCAAGATacacacacacacacacacacaccacTTAACTTCGATGTAAATAAACTTCTGCTGTTAGGGATTTCAGTGTCTGTGTTTCTTTTTCTTATATCTTGAACCTTTCATTAAGATCAAGAAGTTTCATTTATGCTAGAAAATAGAACGTGCTTAAAATAGAGTTAATTAAAGAATGGATTCAGATTTTAGCCTAAGTTCCAGGGAAGAGTTTAAATTTCTGATATCTGTGATATCTGAATTTTACAGTAAAAAGAAAAACACAAGAAGCTACTGAGCAGGATAATTATGTGACTTCAATGTTTAAAATGTAATTCATCTATACTGTATAGATTGACAACAGTTGGAGAAACTGTATTAATAATCCAGGCCTGATCTAGATTGAAAGTCTCCAGTTctggcgagatggctcagtgggtaaaaactcttacagtcggccaggtgagctgagttcgatttccacaaactatagagtggaaggtaaagactgtttcttgcaggttgccctgcgatctttacacatgtgcccacatgtatacacaGAGAGAGACTGAATAAATAAAATGTTGAAAGATTAAAAATAGTTCTAAGAAGCAACTAGAGAATGAATGGATAGACCCTGCAGAGAAAGTAAAATTTATGAGCTGAAAATTTTTGAGGTCCAACAGTGGTTACTTTTTATTTATATATTCAGTAACACCAAATGGGATGGACCTTAAAACATTAACTAGAATTGCTGTAGCTCAAACCTTTTCAGTTTCCATTAGCACAAGAACAGAACACAGACACATGTTTAGGGTTACAGAGCCCTCCCTATATGTTCATCTCTTTGCTCTTGTACTTCGTGGTATAAAATGTCATCCCATGCCAAGTGTCCTGATATATGCCTTTAGGCTACGTAGAGAGATGTCAACTTAAAAAATTTTAAAAATAATGAATAAATagaaaggaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaACAACAAACGTAAAAGAAATAACTTCCAGAATCAGTCTCACTCTATTTTATCTCGGTTCATTATTCCCAATTGAGAAATAAGTAGTTTTTATTAAGTAGAAAATAACATGTTTCTAAGTACCCTATGATACATAGACTCAATAGGACATCATGGGAGTAATTTTAGAAGCTCTATTCATGCACAGAAGAAATCTTCTAGGTAGATATTCCAGACTCTTCCTCATCAGTAAACTAAAACAACCAAATGAATAGAGATCTGTTCTGTGACTAATGAGAGTCATGCTTTAGCCTGTTCTCATCTTTAGTGCTTATGGTGGGATTTTGAAAGCTTTCTTTAAGTGAATATAGATAAGACAATGAAAGCATGCATTTGGCAATGTGGATAAAAATAAAAAGAAGAGATGTGAAAATGACCCAAATGAAGTGATGCTTTTTATACTAATATGTGAGTGGATGGGACAGTCGTTCTCCAATGTCAGTATATTCCACAGTCACTTGGAGATAGCTCATTAAAAAGCATTCTTTGGGCCTAACatggtttagcaggtaagagcacctgttgcttttatacaggatccaggtttggttccagtattcatgtggtggtttgtgaccatctgtaaattgagtgccgggggatccagcacccctttcttgacctctgtaccagctgtatgtggtatatatatgtgcaCATTAACCTAAAATAAAAAATCGCaaaacaga |
| PMID - Link | Title |
|---|