Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RRAGBP1
Plot displaying the genomic locations of a retrocopy (in chr2) and its respective parental gene (in chrX). Each line represents a retrocopy.
Species Ovis aries
Coordinates chr2:94779401-94780321  UCSC
Strand +
Parental Sequence XM_027963003.1
Parental seq. overlap 785 bp
Parental seq. overlap (%) 38.1%
Genomic Region Intergenic
Retrocopy Summary RRAGBP1, located on chr2:94779401-94780321, is a retrocopy of the parental gene RRAGB. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RRAGB
Full Name N/A
Also known as -
Coordinate chrX:51607544-51648632
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RRAGA
Chimpanzee Pan troglodytes RRAGBP1
Bonobo Pan paniscus RRAGBP1
Gorilla Gorilla gorilla RRAGBP1
Orangutan Pongo abelii RRAGBP1
Mouse lemur Microcebus murinus RRAGBP1
Mouse Mus musculus RragbP1
Rat Rattus norvegicus LOC108348096P1
Chinese hamster Cricetulus griseus Rragb_1P1
Pig Sus scrofa RRAGBP1
Cow Bos taurus RRAGBP2
Dolphin Tursiops truncatus LOC109547242P2
Horse Equus caballus RRAGBP1
Dog Canis familiaris RRAGBP1
Panda Ailuropoda melanoleuca RRAGBP1
Cat Felis catus RRAGBP1
Pale spear-nosed bat Phyllostomus discolor RRAGBP1
Velvety free-tailed bat Molossus molossus RRAGBP1
Greater horseshoe bat Rhinolophus ferrumequinum RRAGBP1
Egyptian rousette Rousettus aegyptiacus RRAGBP1
Sloth Choloepus didactylus RRAGBP1
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RRAGBP1
GCCAAATACAGCCATGAAGAAAAAGGTGCTGTTAATGGGGAAGAGCGGGTCGGGGAAGACCAGCATGAGGTCGATTATCTTTGCCAATTACATCGCTCGCGACACCCGGCGCCTGGGTGCCACCATTGATGTGGAGCACTCCCACGTCCGATTCCTGGGCAACCTAGTGCTGAATCTGTGGGACTGTGGCGGTCAGGATACCTTCATGGAAAATTACTTCACCAGCCAGCGAGACAACATCTTCCGTAATGTCGAGGTCCTGATTTATGTGTTCGACGTGGAGAGCCGCGAACTGGAAAAGGACATGCATTATTACCAGTCGTGTCTGGAGGCCATCCTCCAGAACTCTCCTGATGCCAAAATCTTCTGCTTGGTGCACAAGATGgatctggttcaggaagatcagCGTGACCTGATTTTTAAAGAGCGAGAGGAAGACCTGAGGCGTTTGTCTCGCCCGCTGGAGTGTGCTTGTTTTCGAACATCCATCTGGGATGAAACGCTCTACAAAGCCTGGTCCAGTATTGTCTATCAACTGATTCCCAATGTCCAGCAGCTGGAGATGAATCTCAGGAATTTTGCCCAGATTATTGAGGCCGATGAAGTTCTGCTGTTCGAGAGAGCCACGTTCTTGGTCATCTCCCATTACCAGTGCAAAGAGCAGCGCGATGTCCACCGATTCGAGAAGATCAGCAACATAATTAAGCAGTTCAAGCTGAGCTGCAGTAAATTGGCCGCTTCTTTCCAGAGCATGGAAGTTAGGAATTCTAACTTCGCTGCTTTCATCGACATCTTCACATCAAACACGTACGTGATGGTGGTTATGTCGGATCCGTCGATCCCTTCTGCGGCTACTCTGATCAACATTCGCAATGCCAGGAAACACTTTGAGAAGCTGGAGAGAGTGGATGGTCCCAAGCA
>XM_027963003.1
AGCTCCGGGTTTAAGGCAGGTGCCCACGTGATCCTGGCCTGCAGTAGGGTGGCTGCGGTGGTTTACCTGCGCTCCTGAAGGGCGGGCTATTAGGTCGTAGTCGCCGCTGCCTCCAGCGGACTCTCCGGAGCACTTAGGCTCGGGAACAAGGAGCCTACTGAGGCATTCATCGCTTGGTGCCTACGGCATGGGTCTGCTCTTTCTGCCACCTCTGCCTTCCTCATCCCCACCTCTTTGCGAGTGAAGTCCCCTTTGGGTTTCAAGACCTTGGGTCCTGAGGCCCAAACTTGAGACGAACCTCCCGCTAtccctctttccttctcatcctccatctcttcctttgcaTCACCGAATCACAGCCTTTGCGCTGGCCGGCTCGGCGGTGCCTTGAGGCCAAGTTCCAGTCGGTAAAGGTAACCGTGCGGAAAGCGGACCCCCCAGTGGACAAAGGCGGAGGCGAGAATAGAACAGGCCTAAGGACCGTACGCGACGAGAACAGGCGGCTGAGGGGgtgaacaaggaaaaaaaaaaaaaaaagggagagagtacTGCGGATTTAGAAGAGACTGGAAAAGACTTGTTGCACGATGGAAGAATCTGACTCtgaaaaaaagatggagaaagagaatcTGGGGCCCAGGATGGATCCTCCTATAGGGGAACCGGAAGGATCGCTTGGGTGGGTGCTACCAAATACAGCCATGAAGAAAAAGGTGCTGTTGATGGGTAAAAGTGGGTCGGGTAAGACCAGCATGAGGTCTATTATCTTTGCAAATTATATTGCAAGAGACACACGTCGTCTTGGTGCAACAATTGATGTAGAACATTCTCATGTTCGGTTTCTGGGAAACCTGGTATTGAACCTGTGGGACTGTGGTGGACAGGACACCTTcatggaaaattattttactaGCCAACGAGACAACATATTCCGAAATGTGGAGGTTTTGATTTATGTCTTTGATGTGGAAAGCCGCGAACTGGAAAAGGACATGCACTATTACCAATCATGCCTGGAGGCCATTCTGCAGAATTCTCCAGATGCCAAAATCTTTTGCTTGTTGCACAAAATGGATCTGGTACAGGAGGATCAACGGGACCTGatttttaaagagCGAGAAGAAGATCTGAGGCGTTTGTCTCGCCCATTGGAATGCTCTTGCTTCCGAACATCTATCTGGGATGAAACTCTCTATAAGGCTTGGTCCAGCATTGTTTATCAGCTGATCCCCAATGTCCAGCAGCTGGAAATGAACCTAAGGAATTTTGCTGAAATTATCGAGGCTGATGAAGTACTTCTCTTTGAGAGAGCCACTTTTCTGGTGATTTCTCACTATCAGTGTAAAGAACAGCGCGATGCCCACAGATTCGAGAAAATCAGCAACATTATTAAGCAATTTAAGCTGAGCTGCAGCAAGCTAGCTGCCTCTTTCCAGAGCATGGAAGTCAGGAACTCTAACTTTGCTGCTTTCATTGACATTTTTACATCCAACACTTATGTGATGGTCGTGATGTCTGATCCATCTATTCCTTCTGCAGCTACTCTGATCAATATTCGCAATGCCAGGAAACACTTTGAAAAGCTGGAAAGAGTGGATGGGCCAAAGCAGTGTCTTCTCATGCGTTAAAACATTGCCAAATgctgtttcagaaaaataaatggaatactATTTCTTAATGTTGTATTAGTATATATAGGCTCTGAAATGTTGTGATGCTTATCACTTCTGCATTTCTTCTCTACTCCCCAGTCTTCATGTATAACCTTGAATGCTATTTACTCAAATAGCCTGTAAGAAGTTAGAAGATAAACTGTCTATGAATGTGGTGTGACATAAAAGTAGGTGATATGTAAGTGTTCTGATAACAATGTTCTAATAGTGTAAGTGTTCTAGTAACCTGGTTTCAGTTGTTGTGTATGCCGAagccttttccagcatcatcttATATTCCTCATCAGATAGTAACCTATATGTTTGGAATATTACTGTTTTCTCAGCATGCACTAAAAATATTCCTTAaatgcaattataaataaagttttgctATTACAGATTTCA

Publications

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