Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name SPIN1P5
Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chr10). Each line represents a retrocopy.
Species Choloepus didactylus
Coordinates chrX:63534640-63535022  UCSC
Strand +
Parental Sequence XM_037796982.1
Parental seq. overlap 311 bp
Parental seq. overlap (%) 7%
Genomic Region Intergenic
Retrocopy Summary SPIN1P5, located on chrX:63534640-63535022, is a retrocopy of the parental gene SPIN1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SPIN1
Full Name N/A
Also known as SPIN1
Coordinate chr10:16556853-16637416
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Gibbon Nomascus leucogenys SPIN1P1
Golden snub-nosed monkey Rhinopithecus roxellana SPIN1P1
Mouse Mus musculus Spin1P3
Rat Rattus norvegicus Spin1P4
Chinese hamster Cricetulus griseus Spin1_1P1
Sheep Ovis aries SPIN1P3
Dolphin Tursiops truncatus SPIN1P3
Pale spear-nosed bat Phyllostomus discolor SPIN1P1
Velvety free-tailed bat Molossus molossus SPIN1P2
Greater horseshoe bat Rhinolophus ferrumequinum SPIN1P2
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SPIN1P5
CTGGCAAAGCAGTGGAACATATGATTGAGGGGAGCATGGTTCTAGAGTTGAATGGGGGGGATTGGTCTTAGCCCAAGCACCTATCATGAAAGCCTTGTTTTATATTACCTATGAGAAAAACCCTGTCTTACACATATACCAGCTTTTAGATGATTATAAAGAAGGTGACCTTTCTATCATGCCAGAGTCCAATGAGTATCCTCCAGCAGAGAGGGAGTCAAGAAGAGTTATAGATGGCCTGATAGGTGAACGAGTGGAATATACCAAAGAAGATGGCTCCAAATGGATCAGAATGGTCATTCATCAAGTGGAAGCAAAACCCTCTTTTTACTTCACCAAGTTTGATTATGATTTCCACATCTATGTCTATGACTTGGTGAAAA
>XM_037796982.1
GCTCGCGTGGGGCTTGCGGACGGCGGCCCTCAAGGCGTCGGCAGAGTGCTTGTGGATTTTTTGCTGAACTTGTAAAAGAAACTCTTGGATGGTGGATTAATAAGAACATTGGCTGTCTGAAAAGTTTCCAATTGGAGAATATTGAATTTTCACCCTAGTCCAGCAGCTCTGCTGCTCACTTAAATACAGATGAATGAAGACCCCATTTGGAAAGACACCTGGCCAGCGGTCCAGAGCTGATGCAGGACATGCTGGTGTATCTGCAAACATGATGAAGAAAAGGACTTCCCACAAAAAACATCGAAGCAGTGTGGGGCCCAGCAAGCCTGTTTCCCAGCCCCGGAGGAACATCGTAGGCTGCAGAATTCAGCATGGGTGGAAAGAAGGGAATGGACCTGTTACACAGTGGAAAGGAACAGTTCTGGATCAGGTTCCTGTAAATCCTTCTTTGTATCTTATAAAATACGATGGATTTGACTGTGTTTATGGACTAGAACTTAATAAAGACGAAAGAGTTTCTGCACTTGAAGTCCTCCCTGATAGAGTTGCAACATCTCGGATCAGTGATGCACACTTAGCAGACACAATGATTGGCAAAGCAGTGGAGCATATGTTTGAAACGGAGGATGGTTCTAAAGATGAATGGAGGGGAATGGTCTTGGCACGCGCGCCTATAATGAACACGTGGTTTTACATTACCTATGAGAAAGATCCTGTCTTGTATATGTACCAGCTCTTAGATGACTATAAAGAAGGTGACCTTCGCATTATGCCTGATTCTAACGATTCTCCTCCAGCAGAAAGGGAACCAGGAGAAGTTGTGGACAGCCTGGTAGGCAAACAAGTGGAATATGCCAAAGAAGATGGCTCGAAAAGGACTGGCATGGTCATTCATCAAGTAGAAGCCAAACCATCTGTCTATTTCATCAAGTTTGATGATGATTTCCATATTTATGTCTACGATTTGGTGAAAACATCCTAGATGTCATCATGAACTTTGCCAAATTTGTGGAACTATTAAATGTATAATTTGTAGACACAAAGACTTGATTGCTTTCCAGTTTAATGAAAGCTTAAATGTCCCTGCGAACCCACAATCTCTGCCAGCAAAACTGTTTTGTTCTGAgtagtacatatatatatatatatatatatatatatgtgaacaCAAAGCATTTTGTTTAAGGAACCCCTTCCTCTTAAAAGAAGCCTGTCTGTTTGAAGGGGAGTTACAGACACGTTTGGTAAAAGTTAAGCTAATATCATAGTCATCTAAAATTATAATAGATCTTAATCATTTTCCCCTTCACCTTAACACACTCTTATTCTGCTGCCACAATGCAAGCGTAGTTTGGTATTTTTGTTACTGCCTTTTTGAGATATGTATCTGTCTACCTAGCTATTTGTCTTATGTGTACACAGGAGTGCTATATGTATACACATAGATATATGTGTACACATACACTATTGGCAGTCCTTTCTTTGTGGATTGGGGTAGGGGTTAAATACTTTTCTCCAGTTTAATAGGAGTGCTTGACCCAAGTCAATCATATTTACTgtattatattctttattttaaaataaatttggacACAGGAAGCATGAATGTTCAACTTGTTTTGTAAGTCAAAAGTTCAGTGCACCTTTTAAATCTGGAGTTGTCTCTTCAAACTATAAGTCAGAATATGAAACAACTGTGAATAATGACCCACATTAGAAGTGGTACAGATTGGTTAGAAATCTGGTTAGAAGGCTGACTTTAATTCTAAGCAttgtaaattttttgtttgtttatattttaaatcgTAAGTACCCTTTAGTAAAACCCAGTTACTTGGTCCACAATGTATAATGCAGGTGTGTTTTGGATGGCACATTTGATCCGTTATTTGTACAAATTAATAACCTGGGTATTATCATGAATTTAAAAGGCAATAGCAGTGATTTGTGCATATGTGTTTTAAGTTCCTAGAAGAACACAGTGCTTTTACATTTAGAAAAGTAAGTTTTAAGAATGGCGTTGTTGCCTTCTAACAAGTTCTCTGggattcttttattttaactattattatgatgatgattgATTGATAAATGATTATGGTCAGAAGACTTTTTATCCCTGCTTTTCCCCACAGAGAATGTCTAGACAAATAACAGCTTAAATCTCTTAAAGACTTTTGTGGTGTTGTATGTTTTTGCTTAAAGTATGCTGTTAATGTGGATTCCGTTCAGTGGACTCTAGGATTTTGCATGTCAGTGGTATATTACCATATAAGGTTCAGTCATCCATGTTAGCTTGTGGGTGTAAGTTATAGCATCCCTTAGCCACAGAATCCTTTCATGGTTTATTCCTGCAAGGTAGTTTTAAACCAAAACAGAACTGCAAAAGTGGTTGATTTAGCAGTGAAATCTCCATATATCACTTTGTTTGGGATGAACCTTAGCGGTTTGAAAGCAAGGAGAAAGGCAGTATATGAAACCGGTCTCTTGTGGAACAGTTAAGAGGCCTGAGATTTGATCTTGTATATTTAGTGGGCAGAAGCCTAGGCATACATGCTGTCAGTCAGCACCAGAGGTTTTGCATCTGAGTTCTGTGTGACTAATTTGCTCTGACTGGTCTTGAAGTTAGAAATTCAGAAGTATAAAGACCTTTCTCCACACATTTTGCTTGATTCTCATTTAAGCCTTAAGGTTTGTGCCTCATTGTGCTGTTGGATTGTAACAACTACTCACCATGTAAATACAGTATCTCAATTCTCTGCCCATGACTGTGGTTGTATTGTGCCCAGTTTTTCACCTCAGACAACCAAAGGCAAGCTTCTCAATGCAATGTGAAAGCACTGAGTATCCGAGTCATAAATGTTTCTTGTGTGTTTGAACAAGTTTCATTCTGTAGTTCTCTCGAGTCCCTGCATGTAAATCCCAAAGCTGAGCCTGACTCCATGAGCCCAAGCTGATACATGTGGCACAAGAGTGAGTGGGTATATCCACTACTCACAAAATATATGCATAACATGGTACAGTGAATTTGGGGCTGAAAAAGAAAGTTGATTTTGAAGTATCCTGAGGGTTGGGTCAGCTATAACATTTTTAGCATTACCTAATGACTTGCATTGTGGTTTTTCTGCAAGCAACTTTAGCAATTTCAGTATACCACATGATCTGCCAATCTACAGAAGAATGTGacgtgattattattattttaataattgttccATTTATTGCTTTTAGGTCAAGGGAAGGGGaagggtttttgtttatttggtttcattttttttctttctattctttgttTTGGTGGCTTAGACTACATTTATTGATGCTGTGACTAATTCTACTCCCTGGCCCATATGTTCGGGGCTTCATTTTAGGCTTACGTTTCAGATCTGCATGCATTGCTTGCATTTTCCTGGTTTATCTCAATGTTGATTCCTTATTCTAGGAATTCAGCATCAATTTCCAAACTATCATGAGGCTTGtgacaacacaagacatgaatcTGTACAAAATTTATTGGCATTTCTCATTTACCTGCTGTAGTATTATTgtactgtgtgtgtgagtgagtgagggagggagggagagagagcggGAGCGTGTGCAAGCTGTCTGGCTGCCATGTCAAACttcaaagaaaaatctgaaaatcagACCATCCTTTTTTGCATGCTCTATTATAAGTAGAATGTTCAGTGTAACTAACTAAAATTGCATGTTAAggatatttaggtttttttttttctttgcttttatttgttttctgtttcctgtATATTTGCTTACTGTGCTGTTTAGTGGTTGTAGGATAAAAATGCACTGGTGAAGCAAATGTAGTGCCAACAGAAGGTAATTTTCCACTTGTATATGTCATGCAGCATTTGAAGGGACTgtgtattcttaaaaaaaattcacagttACTTCTAAAAACAgatttcatttctattattgttTTATGTGCCAAACCCCAAAGTGCATTGGACTTGAATTTTTGAAAGTTCTAGACCCATTAGAAGACTGTTTTGATTGTCACAAATTGTAGTGCCTAAAAACATTCTGAAGCTGattgtcttaaaaaaaagaaagttctccaaagacaaaacagaaacaattatAACAGAAAGTAATTATGGTTGAAATGTTTGTGGTTCCTTGGAAATGCTGCGCTTTTTGTATTTTACATCATTAGTGCAGTTTGAATGAATGTGTATAGTTCTGAGGTCTTcatgttcacattttaaaattaggtaaaTGACCTCATCTTTAGAGcttgaattcatttttaattttcattttattttatacaatGTGTAGACAGTTCCCTGTTCTCTGCATTTAGAAGTATAGACAATATAAATCTGTTAATTCTGtaagtaatttttataattatgatgTAACTCTATCCTAtccttaaaacatttaaaataaacccTTTATGTGCAA

Publications

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