Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name Spin1P3
Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chr13). Each line represents a retrocopy.
Species Mus musculus
Coordinates chrX:152616569-152616951  UCSC
Strand +
Parental Sequence NM_011462.3
Parental seq. overlap 317 bp
Parental seq. overlap (%) 7.6%
Genomic Region Intergenic
Retrocopy Summary Spin1P3, located on chrX:152616569-152616951, is a retrocopy of the parental gene Spin1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name Spin1
Full Name spindlin 1
Also known as Spin
Coordinate chr13:51250971-51306598
Strand +
Gene summary Predicted to enable methylated histone binding activity. Predicted to be involved in positive regulation of Wnt signaling pathway; positive regulation of transcription, DNA-templated; and rRNA transcription. Predicted to act upstream of or within female meiotic nuclear division. Located in spindle. Is expressed in several structures, including alimentary system; brain; cardiovascular system; genitourinary system; and immune system. Orthologous to human SPIN1 (spindlin 1). [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Gibbon Nomascus leucogenys SPIN1P1
Golden snub-nosed monkey Rhinopithecus roxellana SPIN1P1
Rat Rattus norvegicus Spin1P4
Chinese hamster Cricetulus griseus Spin1_1P1
Sheep Ovis aries SPIN1P3
Dolphin Tursiops truncatus SPIN1P3
Cat Felis catus SPIN1P1
Pale spear-nosed bat Phyllostomus discolor SPIN1P1
Velvety free-tailed bat Molossus molossus SPIN1P2
Greater horseshoe bat Rhinolophus ferrumequinum SPIN1P2
Sloth Choloepus didactylus SPIN1P5
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>Spin1P3
TGGCAAAGCAGTGGAACACATGTTTGAGGGTGAGCATGGCTCTAAGGATGAATGGAGGGGGATGGTCCTGGCTCAAGCGCCTATCATGAACGCCTGGTTTTACATTACTTATGAGAGAGATCCCGTTTTGTACATGTATCAGCTTCTGGATGATTATAAAGAGGGTGACCTCCGTATCATGCCAGAGTCCAGTGCATCTCCTCCAGCAGACAGGGAGCCAGAAGGAGTTGTAGATGGCCTGATAGGTAAACATGTGGAATACACCAAAGAAGATGGCTCCAAGAGGACAGGCAAGGTCATTCACCAAGTTAAAGCCAAGCCTTCTGTGTACTTCATCAAGTTTGACGATGAtttccatatctatgtctatgacTTGGTGAAAA
>NM_011462.3
ggggaagcaagccagtaagaaacatcctccatggcctctgcgtcaagtcctgcttcctgccccagAAAACATCGGACCAGTGTGGGACCAAGCAAGCCTGTGTCCCAACCCCGGCGGAACATCGTAGGCTGCAGGATCCAGCATGGATGGAGAGAGGGCAATGGCCCTGTTACCCAGTGGAAGGGGACTGTCCTGGACCAGGTGCCTGTGAATCCTTCCCTGTATCTTATAAAGTACGATGGATTTGACTGTGTTTATGGACTAGAACTTAATAAGGATGAAAGAGTTTCTGCACTGGAAGTCCTCCCTGATAGAGTTGCAACATCTCGGATCAGCGATGCACACTTAGCGGACACAATGATCGGCAAAGCAGTGGAGCACATGTTTGAGACAGAGGAcggctctaaagatgagtggaggGGGATGGTCTTGGCACGGGCGCCTGTCATGAACACATGGTTTTACATCACCTatgagaaagaccctgtcttgtaCATGTACCAGCTCCTCGATGACTACAAAGAAGGCGACCTCCGCATCATGCCTGATTCCAATGATTCGCCTCCAGCAGAAAGGGAGCCAGGAGAAGTTGTGGACAGCCTGGTAGGCAAGCAAGTGGAATATGCCAAAGAAGACGGCTCGAAAAGGACTGGCATGGTCATCCACCAAGTAGAGGCCAAGCCCTCTGTCTATTTCATCAAGTTTGATGACGATTTCCATATTTACGTCTACGATTTGGTGAAAACATCCTAGATGTCATCACAAACTTTGCCAAATTTGTGGAACTATTAAATGTATAATTTGTAGACATAAAGACTTGATTGCTTTCCAGTTTAATGAAAGCTTAGATGTCCCTGCGAACCCACAATCTCCACCAGCAGAGCTGGTGTTGTTCTGAATAGTGCAGACTGATTCGAACACAAGGCATCTGTGAGGGGAGTCCTCCCTCTTCAAAGCATCTGTGTGAGGGGGTCTTCCCTCTTACAAGAAAGCTGTCTGTTGGGGGTTACAAGCAAGGTGGTAAACGTTAAGCTAGTATCATAGTCATTTAAACCTGGATAGATTGTAACCATTTTCCCTTCACTCTGACACTGTCTTATTCTGCTGCCACAATGCAAGCAtagtttgttatttttgttactgCCTTTTTTGAGAGATTATGTATCTATATAGCTACCTGTCTAGATCTGCATCTGTGTGcctatgtatatattatacacacacagaggcactcaCCGCTGGCTCTCCTTTCCTtggggattggggtgggggtgataACGTTTTCTCCAGTTCAACAGGAGTGCTTGACCCAAgtcagtcatatttataatatgcctgctctttgtttaaaattaaatttgggcacaggaagcacacagagacatttaggttgtttaaAAAGTCAGAATTTCTGAGTACCATTTCAGTCTGGAGGCTTTTAGCTGAGTCCAGGTATAAATTAGCCATAAACAGTCAATGACCCACAGTAGTCTTTAGTAAACTGTTGAGAAATCTGGGTAAAAGGCTGCCTTCAATTCTaagctttgtttttttgtggtttttgttattatttgtttctgttgtttactCTTTAATCGTAAGTACTTTTAAACCACGACCCAGGTCCTTGGTTCACATGGAATAATAAAGATGTGTTTTTAGATGGCACATTGGTCCATTTGTACACACCTGTCATCGGGATCTTAGTACATGGACTTAAAAGGCAACACTACAtcaatggtttgtatatgtggtGAATTCCTGCAAGAACAGTGCATTTGTATTAGAAATGTAAGTTTTAAGGATGGCCTTGTTGCCTTCTATCAAGTTCTCTGGGACTTTGTAATTTTGATTACTACTATTGATACATGGTTATGGTCAGAaggcctcttctcccttcctccctcactccctctcctcCTAGCTTTCCCCACAGAGAATGTTAGACCAGTATGGCTTCTTGCCTTGATCCTGTTGTGGCAGTGTCTGTTCCTGCCCCAGGTGTGCTATTCACGCAGGTTTattccctccatggcctccggGCTTTGCATGTCTATGATGTGTGTGTCGCTGGGAAGGTCATGCTTGCCAGTTATGGGTGGATCGCAGCTCTTCGCCATCAAGTGCATTCAGGATTATTCCTGGGAGGTTGCTTAAAGCTGAAATAGAACTGAAATGCAGTTGGTAGACTAGCCAAACATCTGCTTGCTCTCACTTTGTTTTGGAAGAACCATGGTAGCTTGTCAGCTGGTAGAAAGATGGTTTGTAAAAACCAGTTTCTCACGGAGGTTGAACCTATCTGTGGCTGGACAGTCTTGGATACTGTCAAGCAAACACCAGAGGCTTGGCCAAGTATAGTTACAATTACCTAGTTGGGGTTCTTCCTGATGCAAGAAATTTTTCACTGTTCGAGGCACATGGTTATTGGCTATCCATTTAGTTTTCACAGAGGCTGACCACCTTACACTGCTGGGTGGTCACAACTGCTCACCATGTGAACATAGTACCTCAGTTCTGTCCTTGGCTGCAATCGTTGTGTGCTCAGTGTTTTCTCATAGGCACCAGGGACAGGCTTCTCAAGGCAGTATGATATACCCTAGTCTTTGGTGCCTCTAGTATATGTGACCAGGTGTCGTCCTGCATGTAAATCTCCGAGCTGAGTCTGACTCACAGCCCATGCTGTCATCTGTGGCACAAGTGGGTGTGAGTACGTCCTGCATGCACTAACGGTGCAGAACATGGCATGGTGACTAGAAAGTAAAACTCCTTTTGAAGTGTCCCAAGGACTGGGTCAGTTAGAACCTGTCTGCCACTATCTGATGACTTACATTGTGGTTTTCTACAAGCCACCTCAGTTAACTTTGGTTCCCCGTGGACTCCCAGGCTGGAGGAGGAAAGCGTGAGGACGGGGATGATTTTGATCACGATTCCATTTATTGCCTTTACATAAGGTTGAGGGAAGGGgaaggtttggtttgtttgtcttttaattgttttttttttcttttttttttttttaattcccccaccccaccctctttCTTTTGGTGGCTTCCACCACCCTTAATGGTGACAGACTCCTGGGCCTGCCACCTTGGACTTCCCTTAGGCTCACAGTTCAGATCTGCATGCATTGCTTGCATTGTTCTGGTATCTGAATGTTGATTCCTCATTTAGGAGTTCAGCATTAATTTCCAAAATTTTCATGGGGCTTGTGGCAACACGGGCCGTGAATCTGTGTATAAAATTTACTGGCCTTCTTCACTTACCTGCTCTAGTATCGTatcgtgtgtgcgtgcgtgtgtgacgTCAGGCTGCCACGTAAACTTCAGAGAAGAACCTTAAAGCAGACCATCCATTTTTGCATGCTCTCTTCTAAGTAGAATGTTCAATGTAACTAAAACTAAAATTGCATGTCAAAGAGACctaggttctttctttctttctttctctctttctttcagtttgcttTTGGTTTCCTGTATATTTGCTTACTGTGCTGTTCTAGTGGTTGTAGGGTAAAGACGAACTGGTGAAGCAGTCGTAGCGCCGACCGAAGGTGATTCCAGTTGTATATGTCACGCAGCATTCGAAGGGACTGTGCACGCTCTAAAGATCACAGTTGCTTCTAAGCCAGATTTCATTTCTATTCTTGTTTTATGTGCCAAACCCCAAAGTGCATTGGGCCTGAATCTCTGAACACTGTAGACCCATTAGAAGGAAGATTGTTCTGACCGTCACAAATTGTAGTGCCTGAAAACACTTAACACTGATTGTCTAAGAGATGAAAGTCCTCCAAAGATGACACAGGAAAAATACTACAAGTAATTGTGGTGGAAATGTCTGTGTTCCTTGGGAATGCTGCGCTCTCTGTAGTTTCCATCATTGGTGCAGTTCGAACGAATGAGTAGAGTTCAGAGGTCTTCGTGTTCACATTTAAAACTAGATAAATGACCTCATTTTCTTGAGcttgaattcatttttaattttaattttattttatacaacGTGTAGACGGTTCCCTGTTCTCTGCATTTAGAAGTATACACAGTACAACTGTTAATTCTGTaagtaatttttataattatgatGTAACTCTTATCCTtccttaaaacattaaaataaaccctttatgTGCAACTTGTGGCTGTGAA

Publications

PMID - Link Title