Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name ACTA2P1
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Plot displaying the genomic locations of a retrocopy (in scaffold_m19_p_2) and its respective parental gene (in scaffold_m19_p_5). Each line represents a retrocopy.
Species Phyllostomus discolor
Coordinates scaffold_m19_p_2:213938160-213939273  UCSC
Strand -
Parental Sequence ACTA2_x1
Parental seq. overlap 895 bp
Parental seq. overlap (%) 21.6%
Genomic Region Intergenic
Retrocopy Summary ACTA2P1, located on scaffold_m19_p_2:213938160-213939273, is a retrocopy of the parental gene ACTA2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ACTA2
Full Name N/A
Also known as NULL
Coordinate scaffold_m19_p_5:31423582-31440141
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens ACTG2P1
Bonobo Pan paniscus ACTG2P3
Gorilla Gorilla gorilla LOC101127752P18
Orangutan Pongo abelii ACTG2P1
Gibbon Nomascus leucogenys ACTG2P1
Green monkey Chlorocebus sabaeus ACTG1P5
Crab-eating macaque Macaca fascicularis ACTBP8
Rhesus Macaca mulatta ACTBP8
Baboon Papio anubis ACTG2P1
Golden snub-nosed monkey Rhinopithecus roxellana ACTBP6
Marmoset Callithrix jacchus ACTG1P3
Mouse lemur Microcebus murinus ACTG1P2
Mouse Mus musculus Actg2P1
Rat Rattus norvegicus Acta1P1
Chinese hamster Cricetulus griseus Actb_1P1
Rabbit Oryctolagus cuniculus ACTG2P1
Pig Sus scrofa ACTG1P5
Cow Bos taurus ACTG1P3
Sheep Ovis aries ACTBP3
Horse Equus caballus ACTG1P2
Dog Canis familiaris ACTG1P2
Panda Ailuropoda melanoleuca ACTG2P1
Cat Felis catus ACTG2P1
Velvety free-tailed bat Molossus molossus ACTA2P1
Greater horseshoe bat Rhinolophus ferrumequinum LOC01822P5
Egyptian rousette Rousettus aegyptiacus ACTG2P1
Sloth Choloepus didactylus ACTBP11
Chimpanzee Pan troglodytes Without Homology
Dolphin Tursiops truncatus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

This retrocopy transcript is not present in the database for expression quantification

Related Sequence

>ACTA2P1
CCGCCCTGGTGGTGGACAACGGGTCGGGGGTGTGCAAGGCCGGCTTTGGCGGGGACGACGCCCCCCGGGCCGTGTTCCCCTCCATGGTGGGGCGACCGCGGCACCAGGGCGTCATGGTGGGCATGGGCCAGAAGGACTGCTACGTGGGGGACGAGGCGCAGAGCAAGCGCGGCGTCCTGACGCTGCGGTACCCCATCGAGCACGGCGTGGTCACCAACTGGGACGACATGGAGAAGATCTGGCACCACACCTTCTACAACGAGCTCCGCGTGGCGCCCGACGAGCACCCCATCCTCCTCACCGAGGCCCCCCTGAACCCCAAGATCAACCGGGAGAGGATGACTCAGATCATGTTCGAGGCCTTCAACACGCCGGCCATGTACGTGGCCATCCAGGCCGTGCTGTCCCTGTACGCCTCCGGCCGCACCACGGGCATCGTGATGGACTCCGGGGACGGGGTCACCCACACGGTGCCCATCTACGAGGGCTACGCCCTGCCCCACGCCATCCTGCGCCTGGACCTGGCCGGCCGCGACCTGACCGACTACCTCGTGAAGATCCTCACGGAGCGCGGCTACAGCTTCACCACCACGGCCGAGCGGGAGATCGCGCGCGACGTCAAGGAGAAGCTGTGCTACGTCGCCCTGGACTTCGAGCAGGAGATGGCCGCGGCGGCCGCGTCCTCCTCCTCGCTGGAAAGGAGCTACGAGCTGCCGGACGGGCAGGTGATCACCATCGGCAACGAGCGCTTCCGCTGCCCGGAGGCCGTCTTCCAGCCCTGCTTCCTGGGCCTGGAGTCCCGGGGCATCCACGAGGCGGCCTTCAACTCCATCATGAAGTGCGACGTGGACATCCGCAAGGACCTCTACGCCAACACCGTGCTGTCGGGCGGCAGCACCATGTTCCCGGGCATCGCCGACCGCATGCAGAGGGAGGTGGCGGCCCTGGCGCCCGGCAGCATGAAGATCAAGATCATCGCGCCCCCGGAGCGGAAGTACTCCGTGTGGATCGGCGGCTCCATCCTGGCCTCGCTGTCCACCTTCCAGCAGATGTGGATCAGCAAGCAGGAGTACGACGAGGCCGGCCCGCCCATCGTCCACCGCAAATGCTTCTG
>ACTA2_x1
GAACATCACCCAGAGCCGGGAAGCCCAGCCAGCACTGTCAGGGACCTTGTTACTCGGCTTCAGCCAACATGTGTGAAGAAGAGGACAGCACCGCCCTGGTGTGTGACAACGGCTCTGGGCTCTGTAAGGCCGGCTTTGCTGGGGACGATGCTCCCAGGGCTGTTTTCCCATCCATTGTGGGACGTCCCAGACATCAGGGAGTGATGGTGGGAATGGGTCAAAAAGACAGCTACGTGGGTGATGAAGCACAGAGCAAAAGAGGCATCCTGACCTTGAAGTATCCGATAGAGCACGGCATCATCACCAACTGGGACGACATGGAAAAGATCTGGCACCATTCCTTCTACAATGAGCTTCGTGTGGCCCCTGAAGAGCATCCGACCCTGCTCACCGAGGCACCCCTGAACCCCAAGGCCAACCGTGAGAAAATGACCCAGATTATGTTTGAGACTTTCAACGTCCCGGCCATGTACGTGGCTATTCAGGCGGTGCTGTCCCTCTACGCCTCTGGACGTACTACTGGCATTGTGCTGGACTCTGGAGATGGTGTCACCCACAACGTGCCCATCTACGAGGGCTACGCCCTGCCCCACGCCATCATGCGTCTGGACCTGGCTGGCCGAGATCTCACCGACTACCTCATGAAGATCCTGACGGAGCGTGGCTATTCCTTCGTGACTACAGCTGAGCGTGAGATTGTTCGAGACATCAAGGAGAAACTGTGCTACGTTGCTCTGGACTTTGAAAATGAGATGGCGACGGCCGCGTCCTCCTCCTCCCTGGAGAAGAGCTACGAGCTGCCTGATGGGCAAGTGATCACCATTGGGAACGAGCGCTTCCGCTGCCCCGAGACCCTCTTCCAGCCCTCCTTCATCGGGATGGAGTCTGCTGGCATCCATGAAACCACCTACAACAGCATCATGAAGTGTGATATTGACATCAGGAAGGACCTCTATGCCAACAACGTCCTCTCCGGGGGCACCACCATGTACCCTGGCATTGCTGACCGCATGCAGAAAGAGATCACAGCCCTAGCACCCAGCACCATGAAGATCAAGGTACAGTTCAGTGACAGGCCCCATGGCTATGCTGCTGGTGATGCTGACCCTGTCACCAGACGTGAAGGACTCTTCAGAGACCATATCTTGGTTTCCTGCGCTCACAGGTTTTAGGGCTAGGCAGTGGGTCCAAGACCGTAAGTTTCATACCTTAGGGAATATAAGTCAATCCAGTTCATAAAAGAGGTCAAATTATCTTGTACAAAATTTAATTTATAATCATCCTTGTCTATTAGCTACTTTTAGCAGCTGCACTAGAGGTCGACAGAGCTGCTCATGTGCCCAATCTCTTTAAACTACATAGTTTGTTGTGTTTCCTCATCACGAAATAGTGCATCTCCTGTGTAGAACATTTTTAAAAAATTACAGAGGAGCCAGATATATTTCTGAAGAGGTGTAAGCCCTGTAGACTCACTATCGTATACTCTTCTCCCACTACAAAACACGATCACATCTCAGTGGCCAGGAAGGAGAATTCGATCTTTATCTCTCTGCACACCTTTTGATACAAGGGCTCAAAAGCACAGGATGACTCCAGAGCCACCCAGGACCCCTGTATTGTGTGAGTTTTGAGTCCCAGTTAAGGGAGCCCAGAGATTAAACAGATCATTCTTTGGAAGCAACCTTGCACGGGACTGGTGATTTCACAGAAGCTGTTATTGCTCTGTGAGGGGGCAGCCCAGGTGCAGTTCACACACACAGGAAGTATTTTAATAGGTTCCATTACTTGCACTtctcgctctctccctctctttctctctctctctctctcttctttctctctTCGGAAAGGCTATGTCGGTCACATAAAAGAGTGCTAGACCGAAGCACATAATCTCTCCGCAGTATCAGTTTTGCAAGGCTTCACAGTGAGAGAAGGGACTGTTTTCCTAGAACTGGTGCCTCCGTGTGTGCCCCTCTGATCTGCTCTGACCTCCTTTCTCTCCTACACTGATGGAGGAGGATGAAGCCAGCTGCTGGGCTCACTGACAAAGCCAACCTAGACTGGAGGTAAATTACAGAGAGAGACTATGGCTTGCTCAAGTGGAGCGTTCCTAGTTCTCCAAACTTGGCTTTTTGAATAGAAATGAATGTGGAACTTTGGGCTCCAGTGTGGTAAGAGAAAACCATTAAAAGCCTAGGACAgtaaggtcctaacattaagggaaactgaaactggatgaggggtttacaggaactctgtgcatactctttacaacttttctgtaaatctaaaattatccccccaaaagcttacttctaaaaCCTAACAAAACAAAACCAGAAAACACCTGGGAGaggtctgggtttgaatcctgggtttaacacgcacacaaccagtgagagccaagccaattacctaaacctctctcagtctctctttcctcctctgcactgtgggagtaatttaatactcttagaagtggttatgaaaattaaatgagataatgcatgttaaaacagattcctaacatagtgtctggcacataaaacatgctcagtaaatattaactGCTTGTATTCAAAATAAACGTTCAgccctaggtggtgtggctcagtggattgaccaaagggttgctggttcaattcccagtcagggcacatgctcgatgggaaggtccaggaatccccagtaggccactgcaggccaggtccccagtagggggcacatgtgaagcaaccacacatcaatgtttctccttctttctacttcccttcccctctctctaaaaataaattaaaaataaatgttcaaccagagtttggaggataaacagaaaTTAAATCTTTTAATCCTGGTTTCAGAAACAAATTGTCTGTTTGACTGAAATATCCTTATTCATTTCTACCCAAATATCCAAGTCTGGGATGGAATTTAAAATTGTTCAACTGTGGCCATTTTGGGATTTACTGCAGGTAGGCAAGAACCCTGGCCTGATTTGCTGCTCTCTGTGCCTGAATCATTCAGTTATTTAGGAAGTTTTAGCCCtggctcagtggactgagcaccagtcttcaaaccaaatggtcgctggtttgattcccagtcagggcacatgcctgggatgcaggccaggtccccagtaggggatgcataagacacaatcacacactgatgtttctctcccattccccctcccttcccctctgtctaaaaataaataaataaaatctttaaaaaaGTTTTTAGCATCCTCTTGCATGTTGGGCCTGTGCTATGGGTATGGCCAGGCAGTGCCTGTAATCGGGACCTATCCCAGGCACACGACCCTCCCAACAGGGAGCCCTGAGCCCCTCATTGTGAAATGGTGCACCTCAGTGGACTTGACCAGGTGGGAAAACGTTTGGCACAATCAAACTTCTCACTGAAGGCCCTGGTGGTTGTTTCTGTACAGAGTGTGCTGTGCTGAGTTCTGAGGCACAACTTACAGAAATCAAAGACATCATCAGGGCTCTTAAGTGGAGGCCTTGCAGGATCTGGGGCCAACTTCCAATGTGCACAACAGCAGACTGAATGTGGTGGAGGTGGGACGAATGCTTTGGAATAGATTGAGTAAAGGAAGCCAGAAAAGCAAGTGTGCTCGTTGAAGAATCTCTAAATCCACAAGCCATGAGCACCCCCTTGGATTAGGGTTAAAGTTGGGCATCTGACAGCCCAGACTGTCCCCAATGTCCCTGACACCTCAGCCAGACCCACCAAATCTAGACCCTGGTGGCAGCCCAGGCTCTGCCCTAGTGTACTAATGGCCCTTCTTTCTCATCTTTACCAACAGATCATTGCCCCTCCGGAGCGCAAATACTCTGTCTGGATTGGCGGCTCCATCCTGGCCTCTCTGTCCACCTTCCAGCAGATGTGGATCAGCAAACAGGAGTACGATGAGGCCGGGCCATCCATTGTGCACCGCAAATGCTTCTAAAATACTTCCCTCCTCTCTTTGTTTCTTGCACACAACTGTGAATGTTTTGTGGACTAATACCTTCAATTCTTCTCCATATCATTCCTAGCCAAAGCTCTGACTCATTGCCTACGTGTTTTTTAATAAATCTGAAATATGTTATCT

Publications

PMID - Link Title
No publications available for this retrocopy