| Retrocopy Name | Acta1P1 |
|
| Species | Rattus norvegicus | |
| Coordinates | chr2:42829605-42830633 UCSC | |
| Strand | + | |
| Parental Sequence | NM_019212.2 | |
| Parental seq. overlap | 816 bp | |
| Parental seq. overlap (%) | 56.7% | |
| Genomic Region |
Intergenic |
|
| Retrocopy Summary | Acta1P1, located on chr2:42829605-42830633, is a retrocopy of the parental gene Acta1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
| Gene Name | Acta1 |
| Full Name | actin, alpha 1, skeletal muscle |
| Also known as | - |
| Coordinate | chr19:56674072-56677084 |
| Strand | - |
| Gene summary | Predicted to enable ATP binding activity. Involved in several processes, including response to lithium ion; response to steroid hormone; and skeletal muscle fiber adaptation. Predicted to be located in several cellular components, including filopodium; lamellipodium; and sarcomere. Predicted to be part of dynactin complex. Predicted to be active in actin filament; stress fiber; and striated muscle thin filament. Human ortholog(s) of this gene implicated in congenital fiber-type disproportion and nemaline myopathy 3. Orthologous to human ACTA1 (actin alpha 1, skeletal muscle). [provided by Alliance of Genome Resources, Apr 2022] |
| >Acta1P1 |
| TGATGACGCCCCCCGTGCTGTGTTCCCCTCCATGGTAGGGCGTCCACGACACCAAGGGGTCATGGTGGGCATGGGCCAGAAGGACTGTTATGTGGGAGATGAGGCCCAGAGCAAGAGAGGCATCTTGACCCTGAAGTATCCCATTGAACATGGAGTCGTCACCAACTGGGATGACATGGAGAAGATCTGGTACCACACTTTCTACAATGAGCTCCGTGTAGCACCGGATGAGCATCCTATTCTTCTCACCGAGGCACCCCTCAACCCCAAAATCAACCGGGAGAAGATGACTCAGATAATGTTTGAGGCTTTCAACACACCTGCCATGTATGTAGCTATCCAAGCCGTACTGTCCCTCTATGCCTCGGGAAGGACGACAGGTAACGTGATGGATTCTGGGGATGGCGTCACTCACACTGTGCCTATCTATGAAGGCTATGCTCTGCCCCATGGCATTCTACGACTAGATCTGGCAGGCAGAGACCTGACTGATTACCTCATGAAGATCCTGACAGAACGAGGTTATAACTTCACCACCACAGCTGAGAGGGAGATCGTGCGGGATGTCAAAGAAAAGCTGTGCTATGTGGCCCTGGACTTTGAGCAGGAGATGGTCACTGCAGCTGCTTCATCCTCACTTGAAAGAAGCTATGAGCTCCCTGATGGGCAGGTGATCACCATTGGGAACGAACGTTTTCGATGCCCAGAAGCCATTTTCCAGCCTTCCTTTCTAGGTATTGAATCCAGAGGGATCCATGAGACAACCTTCAACTCCATCATGAAGTGTGATGTGGATATTCGCAAGGATTTATATGCCAACACTGTGCTGTCTGGAGGCAGCACCATGTACCCGGGCATTGCCGACAGGATGCAGAAGGAAATCGTAACCTTGGCACCAAGCACCATGAAAATTAAGATCATAGCTCCCCCAGAACGCAAGTATTCAGTTTGGATTGGGGGCTCCATCCTCGCCAGCCTATCCACATTCCAGCAGATGTGGATCAGTAAGCAGGAGTACGATGAAGCCGG |
| >NM_019212.2 |
| TGAAGCCTCACTTCCTACCCTCGGCACCCAGGGCCAGAGTCAGAGCAGCAGAAACTAGACACCATGTGTGACGAGGACGAGACCACCGCTCTTGTGTGTGACAACGGCTCTGGCCTGGTGAAAGCTGGCTTTGCCGGGGATGATGCCCCCAGGGCTGTGTTCCCATCCATCGTGGGTCGGCCCCGTCACCAGGGTGTCATGGTCGGTATGGGTCAGAAGGATTCCTACGTGGGCGACGAGGCCCAGAGCAAGCGAGGTATCCTGACCCTGAAGTACCCCATTGAACACGGCATTATCACCAACTGGGACGACATGGAGAAGATCTGGCACCACACCTTCTACAATGAGCTGCGTGTGGCCCCCGAGGAGCACCCGACCCTGCTCACTGAGGCCCCTTTGAACCCCAAAGCTAACCGGGAGAAGATGACTCAAATCATGTTTGAGACCTTCAACGTGCCTGCTATGTATGTGGCTATTCAGGCGGTGCTGTCTCTCTATGCCTCCGGCCGTACCACCGGCATCGTGTTGGATTCTGGGGACGGTGTCACCCACAACGTGCCCATCTATGAGGGTTATGCCCTGCCACACGCCATCATGCGTCTGGACCTGGCTGGTCGCGACCTTACTGACTACCTGATGAAAATCCTCACCGAGCGTGGCTATTCCTTCGTGACCACAGCTGAACGTGAGATTGTGCGCGACATCAAAGAGAAGCTGTGCTACGTGGCCCTGGACTTCGAGAATGAGATGGCCACCGCTGCCTCTTCCTCCTCCCTGGAAAAGAGCTATGAGCTGCCTGACGGGCAGGTCATCACCATCGGCAATGAGCGCTTCCGTTGCCCGGAGACGCTCTTCCAGCCTTCCTTTATCGGTATGGAGTCTGCGGGGATCCATGAGACCACCTACAACAGCATCATGAAGTGCGACATCGACATCAGGAAGGACCTGTACGCCAACAACGTCATGTCAGGGGGCACTACCATGTACCCCGGTATCGCTGACCGCATGCAGAAGGAGATCACAGCTCTGGCTCCCAGCACCATGAAGATCAAGATCATCGCCCCCCCTGAGCGCAAGTACTCAGTGTGGATCGGCGGCTCCATCCTGGCCTCGCTGTCCACCTTCCAGCAGATGTGGATCACCAAGCAGGAGTACGACGAGGCCGGCCCCTCCATTGTGCACCGCAAATGCTTCTAGGCGCACCCGCGTCTGTGTACGCGCTCTCTCTCCTCAGGACGACAATCGACCATCGTGCTATGGTTGCAGGGTGGCCCCATCCTCCGCCGTGGCTCCATCGCCGCCACTGCAGCCGGCGCCTGTTTTTGACGTGTACATAGATTCACTCGTTTTACCTCATTTTGTTATTTTTCAAACAAAGCCCTGTGGAAGGAAATGGAAAACTTGAAGCATTAAAGCCAGCCATTCTGTTTTGCTCCAA |
| PMID - Link | Title |
|---|
