Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC04552P2
Plot displaying the genomic locations of a retrocopy (in scaffold_m19_p_9) and its respective parental gene (in scaffold_m19_p_7). Each line represents a retrocopy.
Species Phyllostomus discolor
Coordinates scaffold_m19_p_9:78826019-78826862  UCSC
Strand -
Parental Sequence LOC04552_x2
Parental seq. overlap 702 bp
Parental seq. overlap (%) 33.8%
Genomic Region Intragenic (EFHC2)
Retrocopy Summary LOC04552P2, located on scaffold_m19_p_9:78826019-78826862, is a retrocopy of the parental gene LOC04552. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC04552
Full Name N/A
Also known as NULL
Coordinate scaffold_m19_p_7:48097556-48115239
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Marmoset Callithrix jacchus TATDN2P2
Mouse lemur Microcebus murinus TATDN2P1
Chinese hamster Cricetulus griseus Tatdn2_1P1
Rabbit Oryctolagus cuniculus TATDN2P1
Pig Sus scrofa TATDN2P1
Cow Bos taurus TATDN2P1
Sheep Ovis aries TATDN2P1
Dolphin Tursiops truncatus TATDN2P1
Horse Equus caballus TATDN2P1
Dog Canis familiaris TATDN2P1
Panda Ailuropoda melanoleuca TATDN2P1
Cat Felis catus TATDN2P1
Velvety free-tailed bat Molossus molossus TATDN2P1
Greater mouse-eared bat Myotis myotis TATDN2P1
Greater horseshoe bat Rhinolophus ferrumequinum TATDN2P1
Egyptian rousette Rousettus aegyptiacus TATDN2LP1
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC04552P2
CTGCCAAGGAGCCACTGGGAACAAAGCCTGAAGAAGGGTTTCATTGATACCCATTGTCACTTGGACATGCTCCATTCCAAATTGTCTTTCAAAGGGACCTTTACCAAGTTCAGAAAAATGTATAGCCATTCCTTACCTAAGGAATTTCAGGGCTGTATCTCTAATTTCTGTGATCCTTGCACAATGAAGGATGGTGTATGGGAAAAGCTGTTGAAAGAGGATATGGTTTGGGGAGCCTTTGGCTGTCTCCCCCATTTTGTACATTACTACAATGAATATCAAGAAAGAAAGATTTTGAAAGCCTTACAGTATCCCAAGGCTATAGCTTTTGGAGAAATAGGCTTGGATTACTTTTATAAGTGCAGTACACCTATCCCACAGCAGCACAAGATATTTGAGAGACAGCTACAGCTGGCTGTGTCTCTAAAGAAACCACTGGTGATCCACTGCCAAGAAGCTGACAAAGATCTGCTGGACATCATGAAAAAATGTGTGCCCCCTAACTACCAGATCCACAGGCATTGCTTCACTAGCTGTTATCAAGTCATTGAACCCCTTTTGGAGTACTTTCCCAGCATGTTTGTGGGCTTCACAGCAGTCCTGACTTGCACTTCTGCCTGGCAGGCCCGGGATGTTCTGAAAAAGATCCTACTAGAGCGAGTTGTCATGGAAACTGACATTCCCTATTTCCTTCCTTATGGGATTCCCAAAAGCCCTTGCCAGTATGCCCACCCAGGCCTGGCCCTGCATACAATTCAAGAGATTGCCACAATCAAAGATCAGCCACTCTACCACACCTTAGCCACCTTGTGTAAGAACACTAGTCTTCTCTACAATGTTTAAG
>LOC04552_x2
ATGGCGTCAGAGCGGCGCAAGGTCAAGTACCACTGGAGCAGCACTTCGGAAGGGTGTTCCCGCAAGCGTAGCTGCCTCCGGGAGACCAGTGATGTGGCCCCCTCCAGACGGCCAGCTCGAAGCACTGCGTCGCGTTCTGGAGGGGCCAGCAGCCCCAAGCGCCTGAAAGCTCAGAAGGAGGACGATGTGGCCTGCACACCGAGGTTGTCCTGGGACTCATCCCGCCGCAGAAATtcctcctcctcttcctcctcccattcctcTGGCCCAGGTGTGGACGGGGCTGCCTCCAAAAGCTGCCTGATTCGGAGCACACGGGGTTTCCTTTCGTCAGGCGGATCTCCTCTGTGCCCTGCCAACTCCTCTCTAGAAGACATGGCTTCTCTAGAAGAGGAAACCTGCAGCCTTAAGGTTAATTCCAAAGATAGTTCTCATAGTTCCATGAACTCTGAGTTTGCAGCTGAAGCTGAGGGGCAAAATGATACAACCGAGGACCCAAGCAAGGTTCAGAAAAGAAAGAAGGATAGACTTCGAGACCAAGGCTCTACAATGATCTACCTGAAGGCTATCCAGGGTATCCTGGGAAAGTCGATGCCAAAAAGGAAGGGAGAAACTGTCAGTAGGACAAAATCAAACACAGGAGAGCATCCCAGCCGTGGAGAAGGACCAGCCAGGAGTGTCACTGTGTCTGCTCCTCAGAAAGAGAAAGAGTCAGCCCCAGAGGCCAGACCTAAAGAAAGGGAGGTGGTGATAGAGCACGCCTCTTCAGGAAGTGACTGGTCCGACGTGGACGAGGTCTCCACAGTCAGATTCTCTCAGGAGGAGCCTATCTCGATGAAACTCTCAGCAGTTTCAGAACCTTCTGCCTTCCCCACTGACTATGTCATGTATCCAGCTCATTTGTACAGTAGTCCTTGGTGTGACTATGCCAGCTATTGGACCAGCAGCACCAAGCCTTCCAGCTACCCCTCCATAGGCAGCAGCAGCAGTAGTGACACATTGCAGGCTGGGAGGAGCAGCCGGGGCCTCCTGAGTGATTATTCCTCCAACTCAACAGTGAGCTCCCAAAATACCTCCAGAGATCTGGAGGCAACAGAGGAAGGCAGATCCCAGAATTCTCGTTCATTTCATTTCTCCAGAAGCTTAGAAGAGCAGGTGAAGGAGAAAAGAACATTCCAGGAGGAGATGCCACCCCGTTCTTGTGAAAGACATGCATCTAGCCCTCTGCCAAGGAGCCATCGGGAGCCAAACCTAGAGGAGGGCTTCATTGATACTCACTGTCACTTGGACATGCTCTATTCCAAGTTGTCTTTCAAAGGGACCTTTAGCAAGTTCAGGAAAATTTATAGCAGCTCCTTCCCTAAGGAATTTCAGGGCTGTATCTCTGACTTCTGTGATCCCAGGACGCTGACAGATTGCCTATGGGAGGAGCTGTTGAAAGAGGATCTGGTTTGGGGGGCCTTTGGCTGTCACCCTCATTTTGCACGTTACTACAGTGAGAGTCAAGAAAGAAATCTTTTACAAGCCTTACGGCATCCCAAGGCTGTGGCATTTGGAGAAATGGGCTTGGATTACTCTTACAAATGCACCACGCCTGTCCCAGAACAGCACAAGGTGTTTGAGAGACAGCTGCAGCTGGCCGTGTCTCTAAAGAAGCCCTTGGTGATTCACTGCCGAGAAGCTGACGAAGATCTGCTGAGCATCATGAAAAAATTTGTGCCCTCAGACTACAAGATCCATAGGCATTGCTTCACTGGCAGCTACCCGGTCATCGAGCCCCTGTTGAAGCACTTTCCCAACATGTCTGTGGGCTTCACCGCTGTCCTGACTTACTCCTCTGCCTGGGAGGCCCGGGAAGCTCTGAAACAGATCCCGCTGGAGAGAATCATCGTGGAAACTGATGCCCCCTACTTTTTGCCTCGACAGGTTCCCAAAAGCCTTTGTCAGTATGCCCACCCAGGCCTGGCCTTGCATACAGTTCGAGAGATTGCCAGGGTCAAAGATCAGCCTCTCTCCCACACCTTGGCTACCTTGCGTGAGAACACCAGTCGCCTCTACAATCTTTAA

Publications

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