Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name TATDN2LP1
Plot displaying the genomic locations of a retrocopy (in scaffold_m13_p_9) and its respective parental gene (in scaffold_m13_p_4). Each line represents a retrocopy.
Species Rousettus aegyptiacus
Coordinates scaffold_m13_p_9:27792395-27793247  UCSC
Strand +
Parental Sequence TATDN2L_x4
Parental seq. overlap 730 bp
Parental seq. overlap (%) 32.7%
Genomic Region Intragenic (EFHC2)
Retrocopy Summary TATDN2LP1, located on scaffold_m13_p_9:27792395-27793247, is a retrocopy of the parental gene TATDN2L. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name TATDN2L
Full Name N/A
Also known as NULL
Coordinate scaffold_m13_p_4:120164314-120183933
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens TATDN2P1
Chimpanzee Pan troglodytes TATDN2P3
Bonobo Pan paniscus TATDN2P3
Gorilla Gorilla gorilla TATDN2P3
Orangutan Pongo abelii TATDN2P3
Gibbon Nomascus leucogenys TATDN2P3
Green monkey Chlorocebus sabaeus TATDN2P2
Crab-eating macaque Macaca fascicularis TATDN2P2
Rhesus Macaca mulatta TATDN2P2
Baboon Papio anubis TATDN2P2
Golden snub-nosed monkey Rhinopithecus roxellana TATDN2P2
Marmoset Callithrix jacchus TATDN2P2
Mouse lemur Microcebus murinus TATDN2P1
Rabbit Oryctolagus cuniculus TATDN2P1
Pig Sus scrofa TATDN2P1
Cow Bos taurus TATDN2P1
Sheep Ovis aries TATDN2P1
Dolphin Tursiops truncatus TATDN2P1
Horse Equus caballus TATDN2P1
Dog Canis familiaris TATDN2P1
Panda Ailuropoda melanoleuca TATDN2P1
Cat Felis catus TATDN2P1
Pale spear-nosed bat Phyllostomus discolor LOC04552P2
Velvety free-tailed bat Molossus molossus TATDN2P1
Greater mouse-eared bat Myotis myotis TATDN2P1
Greater horseshoe bat Rhinolophus ferrumequinum TATDN2P1
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>TATDN2LP1
AGACATGCATCTAGTTCCCTTCCAAGGAGCTACTGGGAGCAAAGGCTAAAGGATGGTTTCATTGATACCCACTGTCACTTGGACATGCTCTATGCCAAGTTGTCTTTCAATGGGACCTTTACCAAGTTCAGAAAAATTTACAGCCATTCCTTCCCTAAGGAATTTCAGGGCTGCATTTCTGATTTCTGTGACCCTCGCACATTAAGGGATGGCCTATGGGAGAATCTGTTGAAAGATGATCTGGTCTGGGGAGCCTTTGGCTGTCACCCCCATTTTGCACATTACTACAATGAGTATCAAGAAAGAAATCTTTTGCGAGCCTTAAGGCACCCCAAAGCTGTAGCATTTGGAGAAATAGGATTGGATTATTCTTATAAGTGCACTACACCTATCCCACAGCAGCACAAGATATTTGAGAGACAGTTGCAGCTGGCCGTGTCTCTAAAAAAGCCCTTGGTGATCCACTGCCGAGAAGCTGACAAAGATCTGCTGGACATCATGAAAAAAAATGTGCCCTCTGACTACAAGATCCATAGGCATTGCTTCACTAACAGTTACCCAGTTATCGAGCCCCTTTTGGAGTACTTTCCCAACATGTATGTGGGCTTCACAGCAGTCCTGACTTATGCTTCTGCCTGGGCAGCCCAAGATGCTCTGAAAAAGATCCCACTGGAGAGAATTGTTGTGGAAACTGATGCTCCCTACTTCCTTCCTCGTGGGGTTCCCAAAAGCCTTTGCCAGTATGCCCACCCAGGCCTGGCCCTGCATACCATTCAAGAGATTGCCAGAATCAAAGATCAGTCACTCTACCAGATCTTGGCCACCTTGCGTGAGAACACTAGTCGCCTTTACA
>TATDN2L_x4
ATGGCGTCGGAGCGGCGCAAGGTCAAGCACCATTGGAGCAGCACTTCGGAAGGGTGTTCCCGCAAGCGCAGCTGCCTCCGGGAGCCCAGTGATGTGGCCCCCTCCAGACGGTCAGCTCATAGCTCTTCGTCGCGTTCTGGAGGGGCCAGCAGCCCCAAGCGTCTGAAAGTCCAGAAGGAGGACGATGTGGCCTGTTCACCGAGGTTGTCTTGGGACTCATCCCGCCGCAGAAATTCCTCCTCTTCCTCCCATTCCTCAGGCCCAGGTGTGGACAGTGCTGCCTCCAAAGGCTGCCTGATTCGGAGCACTGGGCAGTTCCTTTCGTCAGGGGGATCCCCTCTGCGCCCTGCCAACTCGTCTCTAGAAGAAATGGCTTCTCGAGAGGAAGCCTGCAGCCTTAAGGTTGATTCCAAAGATAGTTCTCATAATTCCACGAACTCTGAGTTTGCAGCTGAAGCTGATGGTCAAAATGATACAATCGAAGAACCAAACAAGGTTCAGAAAAGGAAGAGAGATAGACTTCGAGATCAAGGCTCTACAATGATCTACTTGAAGGCTATCCAGGGTATCTTGGGAAAGTCAATGCCAAAAAGGAAGGGAGAAGCTGCTGTCACTAGGGCAAAACCAAACATAGGAGAGCGTCCTAGCCATGGAGAAGGCCCAGCCAGGAGCATAACTGTGTCTGCTCCTCCAAAAGAGAAAGAGTCGGCCCCAGAGGTCATAGCAAAGGAGGAAAAGGCTGTGGTGGAGAAGAGTAACTTCTGCAACAGGAGAGTGGTGATAGACCCTCAGGAGGAACCCAGCGAGGAGCCACTTGGTGACCGAAGGACAGTCATTGACAAGTGCTCTCCACCCCTAGAATTTTTGGATGACTCCGACTCTCCTTTAGAAAGCCAAAAGCCTAAAGAAAGGGAGGTGGTGATAGAGCACACCTCTTCGGGAAGTGACTGGTCCGATGTGGATGATGTCTCCACAGTCAGATTCTCTCAGGAGGAGCCTGTTTCGCTGAAACTCTCAGCAGTTCCAGAGCCTTCTGCCTTCCCCACTGACTATGTCATGTACCCAGCTCATTTGTACAGTAGCCCTTGGCGTGACTATGCTAGCTATTGGACCAGCAATGCCAAGCCTTCAGGCTACCCCTCCATGGGCAGCAGCAGTAATGACACGTTGCAGGCTAGTAGGAGCAGCCGGGGCCTCCAGAGTAATTATTCTTCCAGTTCAAGAGTGAGCTCCCAAGACATCTCCAGAGACCTGGAGGCAGCAGAGGAAGGAACATCCCCAAATTCTCGTTCATTTCGTTTCTCCAGAAGCTTGGAAGAAGTCAAGGAGAAAAGAACATTCCAGGAGGAGACGCCACCTCGTTCTTGTGAAGGACATGCATCTAGCTCCCTGCCAAGGAACCATCGGGAGCCAAGCCTAGAGGAGGGTTTCATTGATACCCATTGTCACTTGGATATGCTCTATTCCAAGTTGTCTTTTAAAGGGACCTTTAGCAAATTCAGAAAAATTTATAGCAGCTCCTTCCCTAAGGAATTTCAGGGCTGCATCTCTGACTTCTGTGATCCCAGGACACTGACAGATTGTCTATGGGAGGAGCTATTGAAAGAAGATCTGGTATGGGGGGCCTTTGGCTGTCATCCTCATTTTGCACGTTATTACAGTGAGAGTCAAGAAAGAAATCTTTTACAAGCCTTAAGACACCCCAAGGCTGTGGCATTTGGGGAAATGGGCCTGGATTACTCTTATAAGTGCACCACACCAGTCCCAGAACAGCACAAGGTATTTGAGAGACAGCTGAAGCTGGCCGTGTCTCTAAAGAAGCCCTTGGTGATTCACTGCCGAGAAGCTGATGAAGATCTGCTAAGCATCATGAAAAAATTTGTGCCCTCAGACTACAAGATCCATAGGCATTGCTTCACCGGCAGCTACCCAGTCATCGAGCCCCTGCTGAAGCACTTTCCTAACATGTCTGTGGGCTTCACTGCTGTCCTGACTTATTCCTCTGCCTGGGAGGCCCGGGAAGCTCTGAAACAGATCCCGCTGGAGAGAATCATCGTAGAAACTGATGCCCCCTACTTCCTGCCTCGACAGGTTCCCAAAAGCCTTTGCCAGTATGCCCACCCAGGCCTGGCCTTGCATACAGTTCGAGAGATTGCCAGGGTCAAAGATCAGCCGCTCTCCCGCACCTTGGCTACTCTGCGTGAGAACACCAGTCGCCTCTACAATCTTTAA

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