Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name PDHA1P1
Plot displaying the genomic locations of a retrocopy (in scaffold_m19_p_1) and its respective parental gene (in scaffold_m19_p_9). Each line represents a retrocopy.
Species Phyllostomus discolor
Coordinates scaffold_m19_p_1:122869439-122870624  UCSC
Strand +
Parental Sequence PDHA1_x5
Parental seq. overlap 1003 bp
Parental seq. overlap (%) 13.4%
Genomic Region Intergenic
Retrocopy Summary PDHA1P1, located on scaffold_m19_p_1:122869439-122870624, is a retrocopy of the parental gene PDHA1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name PDHA1
Full Name N/A
Also known as NULL
Coordinate scaffold_m19_p_9:100033072-100291665
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens PDHA2
Chimpanzee Pan troglodytes PDHA1P1
Bonobo Pan paniscus PDHA1P2
Gorilla Gorilla gorilla PDHA1P1
Orangutan Pongo abelii PDHA1P1
Gibbon Nomascus leucogenys PDHA1P2
Green monkey Chlorocebus sabaeus PDHA1P1
Crab-eating macaque Macaca fascicularis PDHA1P1
Rhesus Macaca mulatta PDHA1P1
Baboon Papio anubis PDHA1P2
Golden snub-nosed monkey Rhinopithecus roxellana PDHA1P2
Marmoset Callithrix jacchus PDHA1P1
Rabbit Oryctolagus cuniculus PDHA1P1
Cow Bos taurus PDHA1P1
Sheep Ovis aries PDHA1P2
Horse Equus caballus PDHA1P1
Panda Ailuropoda melanoleuca PDHA1P2
Cat Felis catus PDHA1P1
Velvety free-tailed bat Molossus molossus PDHA1P1
Greater mouse-eared bat Myotis myotis PDHA1P1
Kuhl's pipistrelle Pipistrellus kuhlii PDHA1P1
Greater horseshoe bat Rhinolophus ferrumequinum PDHA1P1
Egyptian rousette Rousettus aegyptiacus PDHA1P2
Sloth Choloepus didactylus PDHA1P2
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Pig Sus scrofa Without Homology
Dolphin Tursiops truncatus Without Homology
Dog Canis familiaris Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>PDHA1P1
TCCATGAAGAAGATGCTCGTAGCTGCTGTGTCCCGCGTGTTGTCCGGTGTCTCCCAGAAGCCTGCTAGCAGAGTGCTGGTAGCATCCTGTAACTATTCAAATGACGCTACATTTGAAATTAAGAAATGTGATCTTCATCATTTGGAAGAAGGCCCTCCTGTCACAGCGGTGCTCACTCGGCAGGATGGGCTCAAATACTACAAGACGATGCAGACTATTCGCCGAATGGAACTGAAGGCAGATCAGCTGTATAAACAGAAATTCATTCGTGGCTTCTGTCACTTGTGTGATGGTCAGGAGGCTTGCTACGTGGGCCTGGAGGCCGGGGTAAATCCCACCGACCACATCATCACATCCTATCGGTCTCACGGCTTTTGCTACACTCGTGGACTCTCTATTAGGTCAATTCTTGCAGAGCTGACAGGACGAAAAGGAGGCTGTGCTAAAGGGAAAGGAGGATCGATGCATATGTATTGCAAGAACTTCTACGGGGGCAATGGCATTGTGGGCGCTCAGGGACCCCTGGGAGCCGGGATTTCACTGGCCTCTAAATATAAAGGAAGCAACGAGATCTGCTTGACTGTGTATGGGGATGGTGCTGCCAATCAGGGTCAGATAGCGGAAGCTTACAATATGGCAGCCTTGTGGAAATTGCCGTGTATTTTCATCTGTGAGAATAACCGCTATGGAATGGGAACAGCTATTACGAGAGCAGCAGCCAGCATTGATTACTACAAGAGAGGAAATTTTATGCCTGGACTAAAGGTAGATGGAATGGATGTGCTGTGTGTTCGGGAGGCAACTAAATTTGCAGCTGATTATTGTAGATCTGGAAAGGGGCCCATAGTGATGGAGCTCCAGACATATCGTTATCATGGACACAGTATGAGTGATCCTGGAGTCAGTTACCGTACCCGAGAAGAAATTCAAAATGTAAGAGGGAAGAGTGATCCGATTATGCTTCTCCAAGATAAAATAGTGAACAGCCACCTTGCCAGTGTTGAAGAACTGAAGGAAATTGATGTTGAAGTGAGGAAAGAAATTGATGATGCAGCCGAGTTTGCTACAACTGATCCTGAACCGGCTTTGGAAGAAATAGCCCATCATATCTACAGTGACAATCCACCCTTTGAAGTTCGTGGTGCAAATCAGTGGGTCAAGTTTAAGTCCATCAGTTAAAGGGAGA
>PDHA1_x5
GGTCCCGCCCCCGCCACAGAACGGAACCCTCGGAGCTGCGGCCAGAGGGGGAAGGAAAAAGGGGTGGTCCGCTGGAGCACCGGAGAACCCGGCTCCTCCGGGCGGGAACCAGTTTGTCTCCCCGAGACCCTCACTTCCCCACCGGCCGCCGACTCTGGGGCAGGCTGCAGACACAGACCTGCCCGGCACAGACACCTCGAGCTCCGGCCCCGCCTGTGGCCCCGCCTCCAGCTCCGCCCTCGGCGCGGAGCGGAACCCGCTGAGCCAGGCCCGAGGAGCAGatgaaaaaatgtcctcaaagagaaacattttgccgacgtggaagagatgaaacaaaaaatggcagaagcactaaaagtcaccaagatatggaagcagcccaagtgtccatcagtagCAGATAGAGCTACACGGCCACCTCCATGCAGTTGGACACCTGGCATGGCCTCACGGATTTTTGTGAGCATAGAACTTGACACACAAAGAAGCTGCAAGCTGTAGTACAAAGGCCACTGAGCAGCCACTCCCGCCACCATCTGGCATCTGCCATCAGGACAGTCCGCTTTTCTTCGGCCTGGGACAAAGGTCTAAGTCCTCAGTGAGGTCTAAAAGGACAACGATGATCTATCGTCAACCTTGTTTCCATTTATCAAAAGCACCTTCGACCTGGGACTGCACCGGGCATGCCCTCCTCCTGCCACCCCCACTATTGATTGCAATCCTTAAGCTGCAGGAAGCCCAGAGACTTGATGGAGTTCCCCTGTGACTGGAGGCAAAGACATTCTGAAGGTGGTAATTTGGGGCAGGAGGGCGGGGTCGCTGGTTGATCAGGGTTTTCTCAATTTGATCCAACATTGTCAAGTTCTTCAACAGctagatccatgatctccttggcagttgcaaaggtgggggtattaaatttcttggtctgtttttaatttattagcagaaggtgttctgtaaagttttttctctcatcaattatttatttaccttgaaattcagtttatatgggagaggcaagataaatgctcgactctttccctttaccagattttggaataattacaatcaggtagctctttgcttctaggtctttccagtgacaagaactcaggtgtatattttttaaggggaaagtagtcatgattttatactgctatttctgattcaaaatcaggactactgggattttacttcctttgattttatatttgtgtctcttttatgctgaaaatgttggttcctactgtcattaacaattacacattcgctttacccacagtctcaaataacaatgacactgataactgaaaacaatgtaaggctttttttttttttgGCAGTGTTATTCAATAACCCTGGGTCAttctctgtggggttaggtcaagaacttggtacatggttaaattcatttgcctcattttgtctccatttttattatgttttgttttatggttatgtaaaacatttgtatggttccaaagtcaaaacAGGACTTTGCCAAAATCCTTCTGCCAGCATGGAGCCCAGCATATTAGAAACACTCAAATACTCATTGACTTTTATGACCTATGTTCTATCCGAAGTCATCCACTGGCGGATGGCTTCCACCAAGAACATCCAAGGCAAGGTAAGGGCCATTGTTTGCCCTAATATTCAGCTTGGTTTGTCCTAATATACAGCTTGATTGAGTGCTTTTAGGGTGATTTGCAAAGGAAAGGCATTGTTTAGGATCTCTAATCTAAATCCTCCAGCTTCGCCCAGAGAAGCTGGTCATGAATTGGCCAGGCAGGTGAGCTAGAGGGAAGAAGAGTCTCTGGGCTCCAGCTCCACCCAAGAGTTGAAGCCCTCCTTTAAAAAAAGTAAGCAGTATTACATAGACTGTCAAAGCTTATTTTCCTTTAAGAAGTGAAACAATCCTTTGTCTGTCTTTCTTGAGCTATAATCGACATTTAACACTATgggtggaagctttgagaggccgtttaaatgatctattttctctctaccatgaaacaagctgagttccagattgaagctgctcatcagtctgggtgccagagtgaaggtgacatatgcagcagagctccaggcaagttgtgagaacctgtagtaggagcaaggtggcttgagtcacttcgaagtgaccaaaatgtggaagtcaattgttaaaatataacctagcctaCTATAAGTTAGTATGCTTTTTTCTAATTCCTTTAATTATCCTTCACAAGTCATGATTTCAGTCCCTGACTATTCTGACCAGCCATTTTTGTCATGATCCCCTGTGTTGTGTGtgtgtgggggggtggtacatggctggcgtatgagaataaaaatatgccaattaagacctgctgaatgaggggacacaagccatccacaccagggcagcaggtagctccctcagcatctgagctcccacttcaggggaatgaaaaaccctgggtaattttgatgaaaggcacaatacattcacacaaaggaagtcaagtcacaatattcattacttacagatcccagaaaATGCCCACTACTACtcccccatcccaggtcacgtgtgagcaggagatagcagggtagtaaacacctattacttacaaggggattggggcaaaggtcactaacttttcccaggctcaactctaagtggttattttcaaaggtggccctggaaaaaccagagcagaaacttgtggtgggaatcctaaactcatgtctgttaggtcagagtcactcaagaaaccagatggacacagtgagccaaggagcaagatttgttagcaggagcagggtttattagccgggaataagagggaaagtggagccaacctagggaggttggggagccaaccaagggaggttaagacttgctcagttattcttagggcagggtttttaagcacaacaacctccaaggggtaactggttggggtgtcagagtctgattggctagagctggttgcggggtaccctttctgctgaccattgttcttgatacatcttatcagccttgggttaaagctgcatcctgttatgcgggacaggctgaccccagaccccaatcttagccgggcatctgtttgtcctggcaggcattttcccaggcttgtttcccatggtgtagttttccacctggtgattttccattcctcctaggcctacctagctctgtcagtgtccttatccaaatgtccagattctaggtgcgagcaaggttgccatacagtaaaatgcctagacagcaactcaaaaaagctgttttctcgtcacaCCCACTTAAAACGTGGAGCCTAAACTTGAACCCACCACCCCAGGTGTAATACCAAGAGCACACAATTAGCACTTCGACCTGCGAACTCCTCTGAAGATACCCTAGAGCTGCTTTAGTGTTTGTTTGTGCTGTTACCATCAGCCGCATCATGCTGTTTAATTCACGTTGAGCAAGTGAATCAACAACTAGAACCAAAAGGCTTTTCCCATTGACCTCTCAACATTTACTTGGGAAACTGATTTTTGGGTCCTGGCTCAAGTAGACAGGGCAGCACTCTGCAATCGTTACAGTATCTCTTAAAGACAAGTTAGCGGCAGAACCATTTACAGAAACCAGATGTTCTGTCTTTTGGCTCAACTACACTGTTAATCTTGATCATCCCGTGTATACAGTGAAGGCAGCACCGGCAGGACTGGACGCACGGTAGAATTGGCCTGCACGATTTCCAATCGTACGCGGCTAATCTGTGGGGCTTAATCCAAGGAGGCCCTTTTTACGAGGGGTTCGGGAGACGGAGCCCCACTTTCCCAAGCAGGAGCCCTCGGTTCCGCGGCTCCGTCCCCGCCCGCCACCTGGCGACCGTGGAGCCCCCCTTATCCGCCCCACTCTGGTCACGACACCCAATGGGCAGCCGAGGATCTCCTAAGTGGGAGGGGCATACCCTGGAAACCGTTCTGGTTGGTCCGAGGCCCGGCGCGGAGTATGACGTCTTTCTGCTCCATCACTGCGCGTGGCGGTTAAGGCGTGGCGTCCGTTCCGGGCGCCTGAAGGAGACTGGAAGACACCTGGGTCGTGCGACGTGTGTCGTTGGGAGTCGTCGCGGTCACCGCCACTGCCCCCGGCCCATGAGGAAGATGCTCGCCGCCGTCTCCCGCGTGTTGTCGGGCGCTGCCCAGAAGCCGGCAAGCAGAGTGCTGGTGGCATCCCGCAATTTTGCAAATGATGCTACATTTGaaattaagAAGTGTGATCTTCACCGGCTGGAGGAGGGCCCCCCTGTCACAACGGTGCTCACCAGGGAGGATGGGCTCAAATACTACAAGATGATGCAGACTGTTCGCCGAATGGAGTTAAAGGCCGATCAGCTGTACAAACAGAAAATTATTCGTGGTTTCTGTCACTTGTGTGATGGTCAGGAAGCTTGTTGTGTGGGCCTGGAAGCTGGCATAAATCCCACAGACCATCTGATCACCGCCTACCGGGCTCATGGCTTCACCTATACTCGTGGGCTTCCTGTGCGAGAAATTCTCGCGGAGCTTACAGGACGAAGAGGAGGTTGTGCTAAAGGAAAAGGAGGATCAATGCATATGTATGCCAGAAATTTCTATGGGGGCAATGGCATCGTTGGAGCTCAGGTGCCCCTGGGAGCTGGGATTGCTCTGGCCTGCAAGTATAATGGGAAAGACGAGGTCTGTTTGACCTTATATGGTGATGGAGCTGCTAATCAGGGTCAGATATTCGAAGCTTATAATATGGCAGCTTTGTGGAAATTACCTTGTATTTTCATCTGTGAAAATAACCGCTATGGAATGGGGACATCCGTTGAGAGAGCAGCAGCCAGCACTGATTACTACAAGAGAGGCGACTTCATTCCTGGGCTGAGGGTAGATGGAATGGATGTCCTGTGTGTCCGGGAGGCAACAAAGTTTGCAGCGGCCCATTGTAGATCTGGAAAGGGGCCCATACTGATGGAGCTGCAGACCTACCGTTACCATGGACACAGCATGAGTGATCCTGGAGTCAGTTACCGTACACGAGAAGAAATTCAGGAAGTAAGAAGCAAGAGTGACCCTATCATGCTTCTCAAGGATAGAATGGTGAACAGCAACCTTGCCAGTGTTGAGGAATTAAAGGAAATTGACGTTGAAGTGAGGAAAGAAATTGAGGATGCCGCCCAATTTGCAACAGCTGATCCTGAACCACCTTTGGAAGAACTAGGCTATCACATCTACTCCAATGATCCACCTTTTGAAGTTCGCGGTGCAAATCAGTGGATTAAGTTTAAGTCTGTCAGTTAATGGGAGAGTGCGTGTAATGGATGGCTGTACCTTTAGTGGGCTATTTGACAGCAACTGTAAGGAACTTTTGTTCTCAACTTTGTGAAGGAGGGAAAACCCACAGAACATATGTAGATTTAAAATAGTAATTGCATGCAGTTTATACAGTTTTGCATTCAAGTTATGTTCAATTTGTATAGGTCTAAATAGCTAATACAGATTTTGCTCAGCCTTTCTTCATATTATTTCCTTAAAATAGTTCTACTCGATTTAGTTGTTCACTGTTTTAATAAGTACTTTTTTAGTTACTGAAAGGAAAAACAATTCCTTGTATGCCTGTCCAATTTTGCCACCTTATTGTGGGCTGGGGAGTTGCCCATTTGCTTGTCTCTGGCCCAGCCCCAAGGCTAACAGATCCTTAATGTGCGCACACATGCCTCCATGAGTGTGTGTGTCAGTGTGGAAGCCTGCTCACACTCACTACCATTGCTCCTTAATATAACAGCATTTACTATATAACCAGGCAGTGGGTAGAAGGACAATTCCATTTTTAAACAGACTATTTCACAATCATTTCCAAGGCCAAATAACTTAGTTATCTGCATTTATACATTCAATAAAACAAAGCAGAAAAGAAAATAGTTTCAAATGCAGCTAACCAGTACTATTAATGTATAACCTAAAACAGTAAGTTAAAACACTTTTCTTTTTTTAAGAATTCCATAATACTCTGGATGTCAAAAACTGTTCTCAAAATACAGCTCTACTCACCTTTAAAACATGTTGATAAACAGGCATAAGACATGTTGATAAAAGGTACAAAACACACGCTGATTAATAACAGGTGAAAACAAACATTTCATTAACTCTTTAGAACTTGACGTTTTTAAATTGTTTGTGGTGTTTCATGTTTCTGTCTGAGAAGCTTTAACAAGAAAGATGTCGGCTCCTTGCTCCCTCTGTTCTTTGGCTTAGTTGACTGCTTAAGCCTCATTCTGGGTAGCTGCGGCCCCCCGAGTCTGTCTTCTGTACTGGGAGATTGCAGTCCAGAGCTTGCAGAGGAGCTCCTCATTACTACAAAACAAACAAGAGTCGTCTTTCAAGTCAAAAAACTTCTTTAGGAGCCCCAATGGCAAAAAGTATAGTATATAATTCTACGCTTGTCTAGATTTGCCACTTGGTGTTGAAAACTTAGCTAAAATAGGAATATGTTGTTTTCATATATGGAGGTGACACTCGTGCCCCAGCAGGAGTGGGACATGGCCTTAGAGGTATAGTCAGACcttggctgtcaaacaaaactccagttcttggttcttgacccaacagccctttcatgctgatacttgtatgatcagttatgcatctctcaggtgagaaaggagactgttttcaaacaaacttgcttctcaaacagcctttcaaacagccttccagaacgaattaagtttgagaactgaggttccactgTATATGCAGGTGTGCTGGTGGATGTTTGTAGAGCAGCCCGTTTAAGTTGACATGGGAACTAGAATGCAGGCTGCAATTTAAAGAGGGGTTTGGCTGTAGCATGGAAAGCAGAGAGATGCTTCCCTTTCACCATCCTGCTTCTGCCTTTTCCTATGGGGTCTTTATAGCTAGTGCCACCTTTTTGGCTTTACTCCCATCTTGAACCTGGGAAAATCACAGAGTTTGGCATTTTCTGACTAAGCCACAGGAAAGAGAATTAACTTCAATGAAGAGGAAAAGGCAGTATCACTTTGTTTTCTACAACTTTGTTTAAAAGCATAATCACATGAAAAAAAATTTCTATTGTACAAAGTGTTCTGAGGCTTGTTCTTACCATAGTCCAAGGTATCTGAGGTCTTCCTTAGTGACCTTATTACGAATATCAGAAAGTGTATAACCCTGTTTAACAATCTGAAATAAAGACCAAATACATAGGAGTTAGGCAGCTTTGTAATAATAGCATAGGAATGGTTTTCTTGGCTATATAAATTTACCTTGTCAATGGCATCTGCATCTGCTCCTTGCAGTTGTAACCAGCGTACAAGCTCTTGATCTGGTCTCTGTCCATAAAACCTGGGAGGCGGTGCTGGGGTCTCTGTAATAATTAGAAGTTTGTTTTACTATATATTGATGTGTAACAGTAAAACGTTAATAAAAGTCACCAGTTGGATG

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