Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name METTL5P1
Plot displaying the genomic locations of a retrocopy (in scaffold_m29_p_11) and its respective parental gene (in scaffold_m29_p_6). Each line represents a retrocopy.
Species Rhinolophus ferrumequinum
Coordinates scaffold_m29_p_11:14086338-14086741  UCSC
Strand +
Parental Sequence METTL5_x1
Parental seq. overlap 349 bp
Parental seq. overlap (%) 55%
Genomic Region Intragenic (ELMOD1)
Retrocopy Summary METTL5P1, located on scaffold_m29_p_11:14086338-14086741, is a retrocopy of the parental gene METTL5. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name METTL5
Full Name N/A
Also known as NULL
Coordinate scaffold_m29_p_6:54339407-54351306
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens METTL5P3
Chimpanzee Pan troglodytes METTL5P3
Bonobo Pan paniscus METTL5P3
Gorilla Gorilla gorilla METTL5P3
Orangutan Pongo abelii METTL5P3
Gibbon Nomascus leucogenys METTL5P2
Green monkey Chlorocebus sabaeus METTL5P1
Crab-eating macaque Macaca fascicularis METTL5P4
Rhesus Macaca mulatta METTL5P4
Baboon Papio anubis METTL5P4
Golden snub-nosed monkey Rhinopithecus roxellana METTL5P6
Mouse lemur Microcebus murinus METTL5P1
Cow Bos taurus METTL5P1
Dolphin Tursiops truncatus METTL5P2
Horse Equus caballus METTL5P1
Dog Canis familiaris METTL5P1
Panda Ailuropoda melanoleuca METTL5P1
Cat Felis catus METTL5P1
Egyptian rousette Rousettus aegyptiacus METTL5P1
Marmoset Callithrix jacchus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Sheep Ovis aries Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>METTL5P1
AGGTTATGTATTAAATTTGACACAGGTGAAGATGCATTGGAAATATTTAACAGAAAAGTGGAACAGTTTGAGTTAACAAATGTTGACATGGTTCAGTGTGATCTGTGCTCATTATCCACTGGAATGTCCAAATCATTTGATACAGCAATTATGAATCCTCCCTTTGTGAACAAAAATAATAAAGGAATAAGTACAAATTTTCTGAAGATTGCTTTGGAAATGGCAAGAACAGTAGTATGTTCTTTATACAAATTCTCAACTAGAAAATATATTCAAAAGAAAGCTGCAGAGTGGAAATATCAAGATAGATATTACAGAGTTGTCAGATGACCCACCAGCATCATATAAATTTCTTAAAAAGAAATCAGTGGACATTGAAGCAGACCTAAATTGGTTTTCTTTTT
>METTL5_x1
ATGAAGAAATTAAGGCTTAAGGAGCTAGAGAGTCGCCTGCAACAAGTGGATGGATTTGAAAAGCCCAAGCTACTTCTAGAACAGTATCCGACCAGGCCGCACATTGCAGCATGTATGCTCTATACAATTCATAATACATATGATGACATTGAAAATAAAGTGGTTGCAGACCTAGGCTGTGGTTGTGGAGTGCTTAGCATCGGAACTGCAATGTTAGGAGCAGGGTTATGTGTTGGATTTGACATAGATGAAGATGCATTGGAAATATTTAATAGGAATGTGGAAGAATTTGAGTTAACAAATGTTGACATGGTTCAATGTGATGTGAGCTTATTATCTAACAGAATATCCAAGTCTTTTGATACAGTAATTATGAATCCTCCCTTTGGGACCAAAAATAATAAAGGGACAGATATGGCATTTCTGAAGACTGCTTTGGAAATGGCAAGAACAGCAGTATATTCTCTACACAAATCCTCAACTAGAGAGCATATTCAAAAGAAAGCTGCAGAATGGAAAATCAAGATAGATATTATTGCAGAGCTGCGATATGACCTGCCAGCATCATACAAATTTCATAAAAAGAAATCAGTGGACATCGAAGTAGACCTAATTCGGTTTTCTTTTTAA

Publications

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