Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name METTL5P1
Plot displaying the genomic locations of a retrocopy (in chr15) and its respective parental gene (in chr2). Each line represents a retrocopy.
Species Bos taurus
Coordinates chr15:17120687-17120874  UCSC
Strand -
Parental Sequence NM_001099135.1
Parental seq. overlap 162 bp
Parental seq. overlap (%) 16.1%
Genomic Region Intergenic
Retrocopy Summary METTL5P1, located on chr15:17120687-17120874, is a retrocopy of the parental gene METTL5. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name METTL5
Full Name methyltransferase 5, N6-adenosine
Also known as -
Coordinate chr2:26534519-26545293
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens METTL5P3
Chimpanzee Pan troglodytes METTL5P3
Bonobo Pan paniscus METTL5P3
Gorilla Gorilla gorilla METTL5P3
Orangutan Pongo abelii METTL5P3
Sheep Ovis aries METTL5P3
Dolphin Tursiops truncatus METTL5P2
Horse Equus caballus METTL5P1
Dog Canis familiaris METTL5P1
Panda Ailuropoda melanoleuca METTL5P1
Greater horseshoe bat Rhinolophus ferrumequinum METTL5P1
Egyptian rousette Rousettus aegyptiacus METTL5P1
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>METTL5P1
TCATTTGATATAATAACTAGGAATCCTCCTCTTGGGGCCCAAAATAATAACAGAATAGATATGACATTTCTGAAGATTGCTTTGGAAATGGCAAGAACAGCAGTATATTCTTTAAACACATCTTCAACTAGAGAACATATTCAAAACAAAGTTGCAGAGTGGGAAATCAAGATATATATTACTGCAGG
>NM_001099135.1
GTGGCGGCCCTTCCGGCCCGGGCAGAGGCAGGAGCAGCTTCTGGAAGTGCAGGAACGTGGCGTGTGGATCCCTTGGCGACTCCAGTCGAGTAACCGTGCGGGATACCTTGTAGGCGGGTTGAAGCCTGGCCCCGGACTCCACCCGCCGCTGGCGCTAGGAGAAGAGCGGGAACCTCCTGGGCTGGATGTCCTCAGCTTGGCCCTCAGCCAGCGGCGCTGAAAAAGATACGGGGGATAGGGGTTGGTGAGATGCAGGTGAAGTAGGTTTCTTTACAGATCCAGCGCCTTTAAACCCTGCGCACACTTTTTTAAAAATGAAGAAATTAAAGCTTAAGGAACTAGAGAGTCGCCTGCAACAAGTGGATGGATTCGAAAAGCCCAAGGTCCTTCTAGAACAGTATCCTACCAGGCCGCACATTGCAGCATGTATGCTCTATACAATCCATAATACATATGGTGACATTGAAAATAAAGTGGTTGCAGATCTAGGATGTGGCTGTGGAGTGCTTAGCATTGGAACTGCAATGCTAGGAGCAGGGTTGTGTGTTGGATTTGACATAGATGAAGATGCATTGGAAATATTTAATAGGAATGTAGAAGAGTTTGAGTTAACAAATGTAGACGTGGTTCAATGTGATGTATGCTCATTATCTAACAGAATGTCCAAATCATTTGATACAGTAATTATGAATCCTCCCTTTGGGACCAAAAATAATAAAGGGACAGATATGGCATTTCTGAAGACTGCTTTGGAAATGGCAAGAACCGCAGTATATTCTTTACACAAATCCTCAACTAGAGAACATATTCAAAAGAAAGCTGCAGAGTGGAAGGTCAAGATAGATATTATTGCAGAGCTGCGATACGACCTGCCAGCATCATACAAGTTTCATAAAAAAAAATCAGTAGACATCGAAGTGGATCTAATTCGGTTTTCTTTTTAACAGCCTCCAAAGACAAAAGCAGCTTAAAATCTAATTTAAATGAATAAAAAATTTGTTTATTAAA

Publications

PMID - Link Title