Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name METTL5P1
Plot displaying the genomic locations of a retrocopy (in chr5) and its respective parental gene (in chr36). Each line represents a retrocopy.
Species Canis familiaris
Coordinates chr5:24837446-24837834  UCSC
Strand +
Parental Sequence XM_038447001.1
Parental seq. overlap 324 bp
Parental seq. overlap (%) 33.9%
Genomic Region Intragenic (ELMOD1)
Retrocopy Summary METTL5P1, located on chr5:24837446-24837834, is a retrocopy of the parental gene METTL5. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name METTL5
Full Name methyltransferase 5, N6-adenosine
Also known as -
Coordinate chr36:14595482-14602541
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Gibbon Nomascus leucogenys METTL5P2
Baboon Papio anubis METTL5P4
Golden snub-nosed monkey Rhinopithecus roxellana METTL5P6
Mouse lemur Microcebus murinus METTL5P1
Cow Bos taurus METTL5P1
Sheep Ovis aries METTL5P3
Dolphin Tursiops truncatus METTL5P2
Horse Equus caballus METTL5P1
Panda Ailuropoda melanoleuca METTL5P1
Cat Felis catus METTL5P1
Pale spear-nosed bat Phyllostomus discolor METTL5P3
Greater mouse-eared bat Myotis myotis METTL5P1
Greater horseshoe bat Rhinolophus ferrumequinum METTL5P1
Egyptian rousette Rousettus aegyptiacus METTL5P1
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>METTL5P1
TTTAACAAATGCCGACATGGTTCAGTGTGGGTGTGCCTATTATCTAACAGAATGTCCAAGTCATTTTATACGGTCAGTAATTATAAATCTTCCTTttgggaatgaaaataaaaaggggatAGATAAGAGTTTTCTGAAGACTTCTTTGGAAATGACAAGAACAGCAGCATATTTATATGAATTCTCAATGGAAAACACATTCATAAGAAAGCTACAGAATGGAAAATCAAGATCAATACTACTCCAAAGCTGCAATATAACCTACCAGCAtcatattaatttcttaaaaagaaatcagtggaCATGGAAGTGGGCCtaatttggttttccttttaaaaaaactccaaAGACAAAAGCATCTTAAAACCTAATTAAtgaatacaaaattt
>XM_038447001.1
GCTTCCGGCCCCGCTCCTGGCGCGGGCGGCGTCCTACCGAGCCCGGGCGCTGCGCGAGGAGTCGTGCGTCGATCTCCCGGCCCCGGCCGGGCGCCTGTGCGGGCATCGGGGAAGCGCGAGGTCGGCGCGGGGGACCCTGGAGGCGGGTCGGAGGCTGGCGGGGGACTCCGCCTGCTGCCGGAGCTGGAAGGAAAGCAGGCACCCGCCTGGGCTAGATCCAGTGCCATTAAGCCCTGCGAACTCacactttaaaaacaatgaagaaattaaagcttAAGGAACTAGAAAGTCGCCTGCAACAAGTGGATGGATTCGAAAAGCCCAAGCTGCTTCTAGAACAGTATCCAACCAGGCCGCACATTGCAGCATGTATGCTCTATACAATCCATAATACATATGATGACATTGAAAATAAAGTGGTTGCAGATCTAGGATGTGGTTGTGGAGTTCTTAGCATCGGAACTGCAATGTTAGGAGCAGGATTGTGTGTTGGATTTGACATAGATGAAGATGCATTGGAAGTATTTAATAGGAATGTGGAAGAGTTTGAGTTAACAAATGTTGACATGGTTCAATGTGATGTGCGCTCATTATCTAACAGAATGTCAAAGTCATTTGATACAGTAATTATGAATCCTCCCTTTGggaccaaaaataataaagGGACAGATATGGCATTTCTGAAGACTGCTTTGGAAATGGCAAGAACAGCAGTATACTCTTTACACAAATCCTCTACTAGAGATCATATTCAAAAGAAAGCTACAGAATGGAAAATCAAGATAGATATTATTGCAGAGCTACGATACGACCTGCCAGCATCATACaaatttcataaaaagaaatccGTTGATATTGAAGTGGACCTAATtcggttttctttttaaaagcctctaAAGACAAAAGCAGCTTAAAACCTAATtaagatgaataaaaaatttttttactaaa

Publications

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