RCPedia: Rtcs

Summary

Retrocopy Name	SLC25A15P1	Plot displaying the genomic locations of a retrocopy (in scaffold_m29_p_24) and its respective parental gene (in scaffold_m29_p_3). Each line represents a retrocopy.
Species	Rhinolophus ferrumequinum
Coordinates	scaffold_m29_p_24:29155467-29156373 UCSC
Strand	+
Parental Sequence	SLC25A15_x1
Parental seq. overlap	785 bp
Parental seq. overlap (%)	86.3%
Genomic Region	Intergenic
Retrocopy Summary	SLC25A15P1, located on scaffold_m29_p_24:29155467-29156373, is a retrocopy of the parental gene SLC25A15. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name	SLC25A15
Full Name	N/A
Also known as	NULL
Coordinate	scaffold_m29_p_3:20968981-20980537
Strand	-
Gene summary	N/A

Homology

Species	Scientific Name	Retrocopy
Human	Homo sapiens	SLC25A2
Bonobo	Pan paniscus	SLC25A15P1
Gorilla	Gorilla gorilla	SLC25A15P1
Orangutan	Pongo abelii	SLC25A15P1
Gibbon	Nomascus leucogenys	SLC25A15P1
Marmoset	Callithrix jacchus	SLC25A15P1
Mouse lemur	Microcebus murinus	SLC25A15P1
Rabbit	Oryctolagus cuniculus	SLC25A15P1
Pig	Sus scrofa	SLC25A15P1
Cow	Bos taurus	SLC25A15P1
Sheep	Ovis aries	SLC25A15P1
Dolphin	Tursiops truncatus	SLC25A15P1
Dog	Canis familiaris	SLC25A15P1
Panda	Ailuropoda melanoleuca	SLC25A15P1
Cat	Felis catus	SLC25A15P1
Pale spear-nosed bat	Phyllostomus discolor	SLC25A15P1
Velvety free-tailed bat	Molossus molossus	SLC25A15P1
Greater mouse-eared bat	Myotis myotis	SLC25A15P1
Egyptian rousette	Rousettus aegyptiacus	SLC25A15P1
Chimpanzee	Pan troglodytes	Without Homology
Green monkey	Chlorocebus sabaeus	Without Homology
Crab-eating macaque	Macaca fascicularis	Without Homology
Rhesus	Macaca mulatta	Without Homology
Baboon	Papio anubis	Without Homology
Golden snub-nosed monkey	Rhinopithecus roxellana	Without Homology
Mouse	Mus musculus	Without Homology
Rat	Rattus norvegicus	Without Homology
Chinese hamster	Cricetulus griseus	Without Homology
Horse	Equus caballus	Without Homology
Kuhl's pipistrelle	Pipistrellus kuhlii	Without Homology
Sloth	Choloepus didactylus	Without Homology
Tasmanian Devil	Sarcophilus harrisii	Without Homology
Opossum	Monodelphis domestica	Without Homology
Platypus	Ornithorhynchus anatinus	Without Homology
Chicken	Gallus gallus	Without Homology
Turkey	Meleagris gallopavo	Without Homology
Zebra Finch	Taeniopygia guttata	Without Homology
Budgerigar	Melopsittacus undulatus	Without Homology
Painted Turtle	Chrysemys picta	Without Homology
Lizard	Anolis Carolinensis	Without Homology
Frog	Xenopus tropicalis	Without Homology
Zebrafish	Danio rerio	Without Homology
Drosophila	Drosophila melanogaster	Without Homology

Expression

Related Sequence

>SLC25A15P1
CATGAAGTCCAACCCTGTCATCCAAGCCGCCATCGACCTCACCGCGGGGGCTCTCGGGGGCACCGTGTGTGTCCTGACCGGGCAGCCCTTAGATACAGTGAAAGTGAAGATGCAGACGTTTCCCGGCCTGTACAAAGACGTCACCGACTGCTGCCTGAAGACGTACTCCCAAGTGGGCTTGCGCGGCTTCTACAAGGGGACGGGCCCGGCGCTGATGGCCTACGTCGCTGAGAACTCTGTCCTCTTCATGTCCTACGGCTTCTGCCAACAGTTTGTGAGGAAAGTGGTGGGACTGGACAAGCAGGCAAGGCTGAGTGATCTGCAAAGTGCAGCCGCCGGTTCCTTGGCCTCTGCGTTTGCTTCGCTGACTCTGTGTCCCACTGAGCTTGTTAAGTGTCGGCTACAGACCATGTACGAAATGGAGGTGTCAGGGAAGATAGTCAAAAGCCACAATACAGTTTGGTCAGTCGTGAGGGGTATACTTAGGAAGGATGGCCCCTGGGGCTTCTACCGCGGACTCTCGAGCACTCTAGCTCAAGAAGTACCGGGTTATTTCTTCTTCTTTGGTGGCTATGAAGTGAGCCGATCGTTTTTTGCCTCGGGGAGATCAAAAGATGAACTAGGCCCTGTCCCTTTGATGTTAAGTGGTGGAATTGCTGGGATTTGCCTTTGGCTTGTCATATACCCAGTGGATTGTATCAAATCCAGAATTCAGGTTCTTTCCATGTCTGGAAAACAGGCAAGATTTATCAGAACTCTTTTAAGTGTTGTGGAAAGGGAAGGAATAGCAGCCTTATATTCTGGACTGACAGCTTCCATGATTCGAGCGTTCCCTGCAAATGGGTCACTGGTGTTCACTTATGAATACAGCAGGAAGATGATGATGAGCCAGTTTGAAGCATACTGA

>SLC25A15_x1
ATGAAGTCCAATCCTGCCATACAAGCTGCCATTGACCTCACGGCAGGGGCCGCAGGGGGCACAGCATGTGTTCTGACTGGGCAGCCCTTCGACACGATGAAAGTGAAGATGCAGACATTCCCCGACCTGTACAGGGGCCTCACCGACTGCTGCCTGAAGACGTACTCCCAGGTGGGCTTCCGGGGATTCTACAAGGGGACCAGCCCAGCGCTCATCGCCAACATCGCCGAGAACTCTGTCCTCTTCATGTGCTACGGCTTCTGCCAACAGGTGGTGCGGAAAGTGGTGGGATTGGACCGGCAGGCAAAGCTGAGTGATCTGCAGAATGCAGCTGCCGGTTCCTTCGCCTCTGCGTTTGCTGCACTGGTGCTCTGCCCCACTGAGCTTGTGAAGTGCCGGCTACAGACCATGTACGAAATGGAGACATCAGGAAAGATAGCCCAAAGCCAGAATACAGTTTGGTCTGTCGTGAAGAGTATCCTCAGAAAGGATGGCCCACTGGGCTTTTACCATGGACTCTCAAGCACTTTACTTCGAGAAGTACCGGGCTATTTCTTCTTCTTCGGCGGCTATGAACTGAGCCGATCGTTTTTTGCATCAGGGGGATCAAAAGATGAACTAGGCCCCGTCCCTTTGATGTTAAGTGGTGGAGTTGGTGGAATCTGCCTCTGGCTTGCTGTTTACCCAGTGGATTGTATCAAGTCCAGAATTCAAGTTCTTTCCATGTCTGGAAAACAGGCAGGATTTATTGGAACCTTTATAAGTGTTGTGAAAAACGAAGGAATAACAGCCTTATATTCTGGACTGAAACCTACCATGATTCGAGCGTTCCCTGCTAATGGGGCACTATTTTTAGCCTATGAATACAGCAGGAAGCTGATGATGAACCAGTTCGAAGCATACTGA

>SLC25A15_x1 

ATGAAGTCCAATCCTGCCATACAAGCTGCCATTGACCTCACGGCAGGGGCCGCAGGGGGCACAGCATGTGTTCTGACTGGGCAGCCCTTCGACACGATGAAAGTGAAGATGCAGACATTCCCCGACCTGTACAGGGGCCTCACCGACTGCTGCCTGAAGACGTACTCCCAGGTGGGCTTCCGGGGATTCTACAAGGGGACCAGCCCAGCGCTCATCGCCAACATCGCCGAGAACTCTGTCCTCTTCATGTGCTACGGCTTCTGCCAACAGGTGGTGCGGAAAGTGGTGGGATTGGACCGGCAGGCAAAGCTGAGTGATCTGCAGAATGCAGCTGCCGGTTCCTTCGCCTCTGCGTTTGCTGCACTGGTGCTCTGCCCCACTGAGCTTGTGAAGTGCCGGCTACAGACCATGTACGAAATGGAGACATCAGGAAAGATAGCCCAAAGCCAGAATACAGTTTGGTCTGTCGTGAAGAGTATCCTCAGAAAGGATGGCCCACTGGGCTTTTACCATGGACTCTCAAGCACTTTACTTCGAGAAGTACCGGGCTATTTCTTCTTCTTCGGCGGCTATGAACTGAGCCGATCGTTTTTTGCATCAGGGGGATCAAAAGATGAACTAGGCCCCGTCCCTTTGATGTTAAGTGGTGGAGTTGGTGGAATCTGCCTCTGGCTTGCTGTTTACCCAGTGGATTGTATCAAGTCCAGAATTCAAGTTCTTTCCATGTCTGGAAAACAGGCAGGATTTATTGGAACCTTTATAAGTGTTGTGAAAAACGAAGGAATAACAGCCTTATATTCTGGACTGAAACCTACCATGATTCGAGCGTTCCCTGCTAATGGGGCACTATTTTTAGCCTATGAATACAGCAGGAAGCTGATGATGAACCAGTTCGAAGCATACTGA

Publications

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