| Retrocopy Name | SLC25A2 |
|
| Species | Homo sapiens | |
| Coordinates (hg38) | chr5:141302731-141303882 UCSC | |
| Coordinates (T2T) | chr5:141828030-141829181 UCSC | |
| Coordinates (hg19) | chr5:140682298-140683449 UCSC | |
| Strand | - | |
| Parental Sequence | NM_014252.4 | |
| Parental seq. overlap | 998 bp | |
| Parental seq. overlap (%) | 26.1% | |
| Genomic Region |
Intergenic |
|
| Retrocopy Summary | SLC25A2, located on chr5:141302731-141303882, is a retrocopy of the parental gene SLC25A15. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
| Gene Name | SLC25A15 |
| Full Name | solute carrier family 25 member 15 |
| Also known as | D13S327|HHH|LNC-HC|ORC1|ORNT1 |
| Coordinate | chr13:40789611-40812460 |
| Strand | + |
| Gene summary | This gene is a member of the mitochondrial carrier family. The encoded protein transports ornithine across the inner mitochondrial membrane from the cytosol to the mitochondrial matrix. The protein is an essential component of the urea cycle, and functions in ammonium detoxification and biosynthesis of the amino acid arginine. Mutations in this gene result in hyperornithinemia-hyperammonemia-homocitrullinuria (HHH) syndrome. There is a pseudogene of this locus on the Y chromosome.[provided by RefSeq, May 2009] |
| Species | Scientific Name | Retrocopy | |
 |
Chimpanzee | Pan troglodytes | SLC25A15P1 |
 |
Bonobo | Pan paniscus | SLC25A15P1 |
 |
Gorilla | Gorilla gorilla | SLC25A15P1 |
 |
Orangutan | Pongo abelii | SLC25A15P1 |
 |
Gibbon | Nomascus leucogenys | SLC25A15P1 |
 |
Green monkey | Chlorocebus sabaeus | SLC25A15P1 |
 |
Crab-eating macaque | Macaca fascicularis | SLC25A15P1 |
 |
Baboon | Papio anubis | SLC25A15P1 |
 |
Golden snub-nosed monkey | Rhinopithecus roxellana | SLC25A15P1 |
 |
Marmoset | Callithrix jacchus | SLC25A15P1 |
 |
Mouse lemur | Microcebus murinus | SLC25A15P1 |
 |
Rabbit | Oryctolagus cuniculus | SLC25A15P1 |
 |
Cow | Bos taurus | SLC25A15P1 |
 |
Sheep | Ovis aries | SLC25A15P1 |
 |
Dolphin | Tursiops truncatus | SLC25A15P1 |
 |
Velvety free-tailed bat | Molossus molossus | SLC25A15P1 |
 |
Greater horseshoe bat | Rhinolophus ferrumequinum | SLC25A15P1 |
 |
Egyptian rousette | Rousettus aegyptiacus | SLC25A15P1 |
 |
Rhesus | Macaca mulatta | Without Homology |
 |
Mouse | Mus musculus | Without Homology |
 |
Rat | Rattus norvegicus | Without Homology |
 |
Chinese hamster | Cricetulus griseus | Without Homology |
 |
Pig | Sus scrofa | Without Homology |
 |
Horse | Equus caballus | Without Homology |
 |
Dog | Canis familiaris | Without Homology |
 |
Panda | Ailuropoda melanoleuca | Without Homology |
 |
Cat | Felis catus | Without Homology |
 |
Pale spear-nosed bat | Phyllostomus discolor | Without Homology |
 |
Greater mouse-eared bat | Myotis myotis | Without Homology |
 |
Kuhl's pipistrelle | Pipistrellus kuhlii | Without Homology |
 |
Sloth | Choloepus didactylus | Without Homology |
 |
Tasmanian Devil | Sarcophilus harrisii | Without Homology |
 |
Opossum | Monodelphis domestica | Without Homology |
 |
Platypus | Ornithorhynchus anatinus | Without Homology |
 |
Chicken | Gallus gallus | Without Homology |
 |
Turkey | Meleagris gallopavo | Without Homology |
 |
Zebra Finch | Taeniopygia guttata | Without Homology |
 |
Budgerigar | Melopsittacus undulatus | Without Homology |
 |
Painted Turtle | Chrysemys picta | Without Homology |
 |
Lizard | Anolis Carolinensis | Without Homology |
 |
Frog | Xenopus tropicalis | Without Homology |
 |
Zebrafish | Danio rerio | Without Homology |
 |
Drosophila | Drosophila melanogaster | Without Homology |
| >SLC25A2 |
| CAGACGAGTGAGCGAACATGAAGTCCGGTCCTGGCATCCAAGCCGCCATCGACCTCACAGCGGGGGCCGCAGGGGGGACAGCGTGTGTACTGACTGGGCAGCCCTTCGACACAATAAAAGTGAAGATGCAGACGTTCCCTGACCTGTACAAGGGCCTCACCGACTGCTTCCTGAAGACATACGCTCAAGTGGGTCTCCGGGGCTTCTACAAGGGCACCGGCCCGGCACTTATGGCCTACGTCGCCGAAAACTCGGTCCTCTTCATGTGCTACGGGTTCTGCCAGCAGTTTGTCAGGAAAGTGGCTGGAATGGACAAGCAGGCAAAGCTGAGTGATCTCCAGACTGCAGCCGCGGGGTCCTTCGCCTCTGCATTTGCTGCACTGGCTCTCTGCCCCACTGAGCTTGTGAAGTGCCGGCTACAGACCATGTATGAAATGGAGATGTCAGGGAAGATAGCAAAAAGCCATAATACAATTTGGTCTGTCGTGAAGGGTATCCTTAAAAAGGATGGCCCCTTGGGCTTCTACCATGGACTCTCGAGTACTCTACTTCAAGAAGTACCGGGTTATTTCTTTTTCTTTGGTGGCTATGAACTGAGCCGATCGTTTTTTGCGTCAGGGAGATCAAAAGATGAACTAGGCCCTGTCCATTTGATGTTAAGTGGTGGAGTTGCTGGAATTTGCCTGTGGCTTGTCGTGTTCCCAGTGGATTGTATTAAATCCAGAATTCAAGTTCTTTCCATGTATGGGAAACAGGCAGGATTTATTGGTACCCTCTTAAGTGTTGTGAGAAATGAAGGAATAGTAGCCTTATATTCTGGACTGAAAGCTACTATGATTCGAGCAATCCCTGCCAATGGGGCACTGTTTGTGGCCTACGAATACAGCAGGAAGATGATGATGAAACAGTTGGAAGCATACTGAAGTGTCTTGGTGAACCTGGATCCGAGTCCATGAGTTTGAGGACTACAGTTCATCACAGGGTTCAGCAGAGTACAAGACCACTGTCTAATTTTGACTTCATGGGAATTTTGGTTTTATCTTCCCTTCTTCTACCCTAAATCTTAACTTTATGGAAGGGCCTCTATTTTACATCATATAATTTCTGCCCATAATTGTATTGAAATAGGAAAGTTGCTGCTCTTGCACTTGC |
| >NM_014252.4 |
| agccgagagcgggcggcggagcctgagctggaCGCGGCCACGCCGGCGCGGCGGGATATGTGGTGCCTGTCATAAGCTCCAGAGAGCTGCCTTCCACAAGACCAGCAGAAGAGTGGGCAAACATGAAATCCAATCCTGCTATCCAGGCTGCCATTGACCTCACAGCGGGGGCTGCAGGAGGTACAGCATGTGTACTGACCGGGCAGCCCTTTGACACAATGAAAGTGAAGATGCAGACGTTCCCTGACCTGTACCGGGGCCTCACCGACTGCTGCCTGAAGACTTACTCCCAGGTGGGCTTCCGTGGCTTCTACAAGGGTACCAGTCCAGCACTAATCGCCAACATCGCTGAGAACTCAGTCCTCTTCATGTGCTACGGCTTCTGCCAGCAGGTGGTGCGGAAAGTGGCTGGATTGGACAAGCAGGCAAAGCTGAGTGATCTGCAGAATGCAGCCGCCGGTTCCTTCGCCTCTGCCTTTGCTGCACTGGTGCTCTGCCCCACGGAGCTCGTGAAGTGCCGGCTGCAGACCATGTATGAGATGGAGACATCAGGGAAGATAGCCAAGAGCCAGAATACAGTGTGGTCTGTCATCAAAAGTATTCTTAGGAAAGATGGCCCCTTGGGGTTCTACCATGGACTCTCAAGCACTTTACTTCGAGAAGTACCAGGCTATTTCTTCTTCTTCGGTGGCTATGAACTGAGCCGGTCCTTTTTTGCATCAGGGAGATCAAAAGATGAATTAGGCCCTGTACCTTTGATGTTAAGTGGTGGAGTTGGTGGGATTTGCCTCTGGCTTGCGGTATACCCAGTGGATTGTATCAAATCCAGAATTCAAGTTCTTTCCATGTCTGGAAAACAGGCAGGATTTATCAGAACCTTTATAAATGTTGTGAAAAATGAAGGAATAACGGCCTTATATTCTGGACTGAAACCTACTATGATTCGAGCATTCCCTGCCAATGGAGCACTCTTTTTGGCCTACGAATATAGCAGGAAGTTGATGATGAACCAGTTGGAAGCATACTGAAGTGTCTTGGTGGGCCTGAGCCAAGCACAGGTGTTTGAGGACTACAGTTCATCTCAGGGTTTCTTGGAGTACAAGACCAGTGTGAAGTTATTCTGATTTCTTGGGAATTTTGCTTTTTGTCTTCCCTTCTACCCTACATCTTAAACTTTATGGAAGAACCTCTATTTTGCATCATATCATTTCTGTCCATAATTGTACTGAAATAGAAAAGTGACCGCTCTTGCTCTTGGTAAAATATAGAGTGGTCAGTAGCCTTATGCACCTAATTCAAAAGGTGGAATATAGTTCTGTCAGGGCTTTTACGTAAACCTCCACTTGTACATGCAATTTGGACAGTTATGTGTTGAGGGAAATACAGTTTGGTACCTTGTTTATTTCAAATATCAGAAAAACCCAGAGGTGATCATTTCTCATGAAGATGCTTATAAATGGTTGCTTAACCCATTCTAGATGTAGGGTCTGCTTAATGTGTGTACTTTTCTAAGTGGTTGATTAttttttatttttttgatacagagtctcactctgtcacccagactggagtgcagtggcacgatctcggctcactgcaacctccgcctcctgggttcaagcgattctctcacctcagcctcctgagtagctgggattacaggtacgcgccaccatgtccagctaattttttttggtattttttgtagagacgaggtttcaccatgttgtccaggttggtctcgaactcctgacctcaagtgatccgcccacctcggcctcccaaagtgctgggattactggtgtgagccaccatgcccagccAGTGGTTGAATTTTTTAAAAAGTGTTCATGGGGTGCTTGAAAACTAAAATATCCTTCTAGATTTGTAAGACAGTATACCTGCATACTGGTGTGGCTTCCACACTTGAGTAAAAGCTTCAGAGTAGGTATCCTAGATTTCCCCAAGATGCTCTACTCTTAAAATAGTGCCATTCATTTTCTAGGTGGGATCATATTCCACGCTGACTATATTGCTAGGGGTGGCCCAGAGGGTCAGGCCTTTGGGAAATAGCATGGCCTTTACCAGCTTCCCTTCTCTCCCAAAGAACTTCCCTTCTTGGGCTTTAGATTGAGGAAGGGGCTGAGTGGTAGGCGGTGCTGCTGTGCTCTGATGAAGACCCATGTGGCTAGCAACAGCGCTTACCTTTTGTCTCTGGGTCCTGGCCTGGGGCCATCAATCCACTTTGGGCCACTCACTGTCTGCTCTGCCTCCACCAATCAGAAACCCTTCCAAGGAACAGTGAGAGCCAAAGCCAAGAGAAGCCTTCTTCCCTGTTTGGTGATTGTGTGACAGTGGGTGAACCTCTCTCAGAGAGAACTAGAAAGAACTCAGTGCTTGTACTCCACAGTGAGTAATGTCAGGTCTGACCCATCCTGAAGCCTGTCTTGCCATGCTTTTACAGTGTTGGAGGCTTCTACATTTGGTACTTGCAGTCAGTAAGTCTTAATGATGACTGTATATGTGATATGAGTTTATAAAGCAATGGAACATAAGAAAAGCAATTGTAggccaggcgcagtggctcacgcctataatcccagcactttgggaggctgaggcgggcgggtcacaaggtcaggagttcgagaacagcctgaccaacatggtgaaaccccatctctactaaaaatacaaaaattagctgggcgtggtggcacgtgcctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaacccgggaggcagaggttgcagtgaactgagattgtgccactgcactccagactgggtgacacagcgagacttcatctcaaaaaaaaaaagaaaagaaaaGCAATTGTACTTCACTATGCCATATGTATGTATTCACTGACCAAAAATTCACTGACCAACCAACCAAACTCCACACTTCATCTGATCCCCCATAGACTTGGGGATGGACAGCTGTTCTTTGGCCATATGGTATAAGAGGATCATTCTTGTCACTACTTAAGTTAGCCTCATCATTTTGTGCTGCTCCAACACCAGCAGGGTATCTCCCAATAAAGTGTTCCTAAGCAGCCTGTATACTGAGTGCAAGCAGGCTATCAATTTTAATAATAGTCCATACCATGTATGTGTTTCTGTCAGCAGAATGTACATGTTGTACAAAACCTCCAGGTTCCTTAAGCTTTTTGCTGTCCATGAATCCTCTGTGGCAACTGTAATCACAGAGCCAGAAGCCAGAGGGCCAGGGATATGAGAGGCTGACAAACATCAGGGGACATCTGGGGAGGAGATCCCTGTCATGTCTCTTGTGCCATGGAGCTATTATGGCTGGTCTTCCATTTGCTTTTTCTTTAAGTGAAAACCATTTTTCTACTTTGCTTTTCTCTCCATACTTAAATGGTCAGTAGCTACTGAGTGGTGCTTTATCTGAATAGGCCTGGATCGAAGTAAAATAGAAATGGGACTGGCTTTCCACAGGAAGTAAACTGCTTCAGAGCCCACAGTCCCCTGCTCAGTGTCCGGAAAGAAGTCAGTCATCCCTGTTGGCAGTAAATCTTCCCACAGGCCGTCCATTAGAGATTTAACTAGATATGTTCAATAGAAAGAGTCTGAGGCAAGTGGAAATGAGGAACGGAAACTTAGGTTGGGAGAATATTTTTTTTTTATTCATTCTGTTTGCTTAATTCAGAGTACAGTTTGTGCTATTTCATATCTGTACTCCAGGCAGAAATATAACTTGAAAATACTGTGTCTAAAGAAATTTCAGTGTTCTATCATTAAATTATTTACTTAATA |
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