Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name SLC25A15P1
Plot displaying the genomic locations of a retrocopy (in chr3) and its respective parental gene (in chrUn0021). Each line represents a retrocopy.
Species Oryctolagus cuniculus
Coordinates chr3:23332417-23333301  UCSC
Strand -
Parental Sequence XM_002721098.3
Parental seq. overlap 725 bp
Parental seq. overlap (%) 21.8%
Genomic Region Intergenic
Retrocopy Summary SLC25A15P1, located on chr3:23332417-23333301, is a retrocopy of the parental gene LOC100356921. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC100356921
Full Name N/A
Also known as SLC25A15
Coordinate chrUn0021:3891382-3911956
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens SLC25A2
Bonobo Pan paniscus SLC25A15P1
Gorilla Gorilla gorilla SLC25A15P1
Orangutan Pongo abelii SLC25A15P1
Gibbon Nomascus leucogenys SLC25A15P1
Green monkey Chlorocebus sabaeus SLC25A15P1
Crab-eating macaque Macaca fascicularis SLC25A15P1
Baboon Papio anubis SLC25A15P1
Golden snub-nosed monkey Rhinopithecus roxellana SLC25A15P1
Mouse lemur Microcebus murinus SLC25A15P1
Pig Sus scrofa SLC25A15P1
Cow Bos taurus SLC25A15P1
Sheep Ovis aries SLC25A15P1
Dolphin Tursiops truncatus SLC25A15P1
Panda Ailuropoda melanoleuca SLC25A15P1
Cat Felis catus SLC25A15P1
Pale spear-nosed bat Phyllostomus discolor SLC25A15P1
Velvety free-tailed bat Molossus molossus SLC25A15P1
Greater mouse-eared bat Myotis myotis SLC25A15P1
Greater horseshoe bat Rhinolophus ferrumequinum SLC25A15P1
Egyptian rousette Rousettus aegyptiacus SLC25A15P1
Chimpanzee Pan troglodytes Without Homology
Rhesus Macaca mulatta Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SLC25A15P1
GGGGGCACGGCGTGCGTACTCACCGGGCAGCCCTTCGACACGATGAAAGTCAAGATGCAGGCGTTCCCCAGCCTGTACTCGGGCCTCACCGACTGCTTCCTGAAGACCTACTCCCACGTGGGGTTGCGGGGCCTCTACAGGGGCACAGGCCCCGCACTGATGGCCTATGTGGCCCAGAACTCTGTCCTCTTCATGTGCTACGGTTTCTGCCAGAAGTTTGTCAGGAGCGTGGCCGGACTGGACAAGAAGGCGAAGCTGAACGACCTGCAGTCTGCGGCCGCGGGCTCCCTGGCCTCGGCGTTCGCCGCGCTGGCCCTCTGCCCCACTGAGCTGGTCAAGTGCCGGCTGCAGACCATGTACGAGTTGCAGCTATTAGGGAAGATAGCAAAGAGCCATAATACAATTTGGTCTGTGGTGAAGAGCATCCTCAGAAAGGACGGCCCCTTAGGCTTCTACTACGGACTCTCGAGCACTCTGCTGCAAGAAGTACCGGGCTATTTCTTCTTCTTCGGGGGCTACGAACTGAGCCGATCGTTTTTTGCCTCAGGCAGATCAAAAGATGAACTAGGTCCAGTTCCATTGATGTTAAGCGGTGGAGTTGCTGGAATCTGCCTCTGGCTTGTCATATTCCCAGTGGATTGTATTAAGTCCAGAATTCAAGTTCTTTCCATGTATGGAAAACAGGCAGGATTTTTTGGAACTCTTTTGGGCATTGTGAAATATGAAGGAATAGCAGCCTTATACTCTGGACTGAAACCTACCATGGTTCGAGCAGTCCCTGCCAATGGGGCACTATTTTTGGCCTATGAGTACAGTAGGAAGATGATGATGAGCCAGTTGGAACCCTGCTGAAGTGTCTTGGTGAAACTGGATCCAACCACAGGA
>XM_002721098.3
CTCCCATCTGATCAGTTCATTTCCCCAGGGACCAGAGACATGCGTGGTCGCCAGCGCCCCTGTCTCTCCAGAAGTCGGGCAATGGAGAAGTTTGCAAGCGGGGCAAAGGACGTTGAAAGGGTTGTTTTTCTATCAAGGGGTAGAGCCAACTCACCAGCAGTTGTAATGCATGCTGCTCAATCTTGCTGCCGCCAAGCCCTGACTTGTCCAAGCCCTAGCTTCGCAGAATCTGAGGTTTTGCACTCCTCCTCTGGGGTTATGCGGTGCCTGTCATAAGCTCCAGGGAGTTGCCCTTCACTGAGGCCAGCAGCATGAAGTCCAATCCCGCCATCCAAGCTGCCATTGACCTCACAGCCGGGGCTGCAGGGGGCACAGCCTGCGTGCTGACCGGGCAGCCTTTTGACACGATGAAGGTGAAGATGCAGACGTTCCCTGACCTGTACCGGGGCCTCAGTGACTGCTGCCTCAAGACCTACGCCCAGGTGGGCGTCCGCGGCTTCTACAAGGGGACCAGCCCAGCACTAATCGCCAACATCGCAGAGAACTCGGTGCTCTTTATGTGCTACGGCTTCTGCCAGCAGGTGGTACGGAAAGTGGGGGGACTGGACAAGCAGGCAAAGCTCAGCGACCTGCAGAACGCGGCCGCTGGGTCTTTTGCCTCTGCCTTTGCCGCGCTGGTGCTTTGCCCTACAGAGCTGGTGAAGTGCCGCCTCCAGGCCATGCACGAGATGGAGACTTCAGGGAAGATTGTCAACAGCCAGAACACGGTTTGGTCTGTCGTGAAGAGCATCCTTAGGAAGGATGGTCCCTTGGGCTTCTACCACGGACTCTCAAGCACTTTACTTCGAGAAGTACCAGGCTATTTCTTCTTCTTTGGTGGCTATGAACTGAGCCGATCATTCTTTGCATCAGGGAGATCAAAGGATGAACTAGGTCCTGTGCCTTTGATGTTAAGTGGTGGAGTTGGTGGGATTTGCCTCTGGCTTGCTGTATACCCAGTGGACTGCATTAAATCCAGAATTCAAGTTATGTCCATGTCTGGCAAACAAGCGGGATTTACCGGGACTTTGCTAAGTGTTGTGAGGAATGAAGGAATAGCAGCCTTATATTCTGGACTGAAACCTACTATGATTCGAGCATTTCCTGCCAATGGGGCACTATTTTTGGCCTACGAGTACAGCAGGAAGTTGATGATGAGCCAGTTCGAAGCATACTGAAGTGTCTTGGTGGGCCTGGATCCAAACACAGGGAATGAGGACTGCAGTTCATCTCAGGGTTTCGCGGAGGATGAGACTGTGTGGAATGAGTCTGATTTCTTGGGAAATCTGTTTTTGTCTTCCTTTCTTCTGCCCTAAGTCTTAAACTTTATGGAAGGACCTCGATTTTTACATCCTATAATTTCTATCTAAAATTTGTATTGAAATTGAAAAGCTGGTGCTCTTGCCCTTGGTAGAATGTACGAGTACAGGTGGCTCTTTGCTCCCAACCTCGAAGGTGAATGTGGTTCTGTCAGGGCACTTGCATCAGCCTGGATGCATTACATGCAGTTTGGGTGGGATTGAGTGAATGGAAACAGTGTGGTTTAATGTTAAATCTCAATTATCAACAGAAAAACCCAGAAGTGACTATTTTTCATGAACATGATTATAAATAATTGCTTAACCTATTCTAGATACAGGGTCTCTTTTAAAGTCTGCTTTACCTGCATACTATGCTAAGTGGTTAAAGTTATTCAAAAGTTTTCATATGGTATGTTAAAAACTAAAACATCCATGTAGATTACTAAGGGCATAACCTGCATCCTGGTGTGGTTTCCACATTCTTGCTATTTCTGAGTAGTCATCCTGGATTTTCCAAGATGCTCTCCTTCTACCTTAGTGCCATGTATTTTCTAGATGGGACCACAGCCCATACTCCAACTGTATTGCAGCAGGTGGCCTGGAAGATAGGGCCTTTGGGAAGCAGTGTGGCCTTCACCAAATTCCCTTCTCCCAAAGAACTTCCCCCAGCTGGAGGTTGGAGTGGTAGTGCGCTGGGGTAGGAGTGAGCTGCTGTGCTTTGGTGAAGACCCATGTGGCTGGCATAGGTATTAGCTACCGCCTCTGGCTTGGGTAGGGTCCATGCTGTCCTGTTGGCCTGTCTGGGATGGTTGATCCACTCTGAAACACCCACTGTCCTCTCTGTCTCTACTGATGGGAAACCCTTCCAGGGAAAAGAATGCCAAAATCAAGAGAAGTCTTTGTTTACTGGCTGGTGACTGAGGGGCAGAACTGGAGGATGATCTCCTCCCCTGTCATCTAGAAAGAACCACAGGCTTCTGCCCCATAGGCAGACCCACCTGCAGCTTAGCTCTGGGTCCGAAACTCCCCAGCATATGTCCCCAGTGAAGAGCTGCCTACATTTGGTAAGTGTTCTCAGTAAGTTATAATGATGACTGTATGTGGGGTGTGACTTTATAAAGCAATAGAACATAGAAGCACCTTATTAAACCTGCCAAATGTATGGTTATATCAACCAAAACCACCACTCAAGCCCGTTAGTCTGATCCCCGCAGGCTTGCTGATGGGCAGCTGCTCTTTGGCCATGTGGAGTAGGAGGGTCATTCTCGTCACCACTGGAGTGTGCTTCAGCATCCTCTGCTGCTCCAAGACCAGCAGGCTCTCTCAATAAAAAGTGTTGTTAGGCAGCCTGGGAGGCTGAGAGCCAGAGGCCAACACAGCAGAAACAGTCCTTGCCTGTATCTCCTCCATCCTGGCAGAATGGAAACATTGTGTGAAACCTCTGGTTTCCTTAAGCTTTTTGCTCTCCCTGAGGCCTCAGTGGCAGCTCTTAGCCATGGTGCTAGAAGCAAGAAGGGGCCGGCACATGGGCCAGGGGTGGGCCTGGAAGTTGCTTTCTGTTTGCTTTTTAAGAGAAAACCAATTTTTGACTTGACTTTTCTCTCCATACTTTACTGATCAGTAGCTACTTAGTGGTGCTTCCCATGAATGGGCCTGGATGGAAACAAAACAGCAGAAGGGGCTGCTTTCCTGCAGGAAGTGAATTGTTGTAGCGTCTTCCATCCCAGGAGCTCAGCAGAGCAGCCCTTTTGGTTTGGGGTCTTTGCAAATTGTCTATTCTAGGCTTACCTAAACATGCTCAGCAGAAACAGTCTGAGGCAGTGGGAGTAAGGCCGGGAGATCTCAGTCAGGAGGATTTTTTTCATTCTATTTTTAAATTCATGGTTCAATTATACCATTTTAGATCTGTACTCCAAAGAAAATATTGTGTTTAAAGAAATGTGTTTTGAAGAATTTGAGTGTTCTATCATTAAATTATTTACCTACTA

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