Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Retrocopy Name MORF4L1P4
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Plot displaying the genomic locations of a retrocopy (in scaffold_m16_p_2) and its respective parental gene (in scaffold_m16_p_24). Each line represents a retrocopy.
Species Molossus molossus
Coordinates scaffold_m16_p_2:30052246-30053056  UCSC
Strand -
Parental Sequence MORF4L1_x10
Parental seq. overlap 619 bp
Parental seq. overlap (%) 59.9%
Genomic Region Intergenic
Retrocopy Summary MORF4L1P4, located on scaffold_m16_p_2:30052246-30053056, is a retrocopy of the parental gene MORF4L1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name MORF4L1
Full Name N/A
Also known as NULL
Coordinate scaffold_m16_p_24:707665-730589
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens MORF4L1P8
Chimpanzee Pan troglodytes MORF4L1P6
Bonobo Pan paniscus MORF4L1P6
Gorilla Gorilla gorilla MORF4L1P6
Orangutan Pongo abelii MORF4L1P7
Gibbon Nomascus leucogenys MORF4L1P6
Green monkey Chlorocebus sabaeus MORF4L1P7
Crab-eating macaque Macaca fascicularis MORF4L1P6
Rhesus Macaca mulatta MORF4L1P6
Golden snub-nosed monkey Rhinopithecus roxellana MORF4L1P2
Marmoset Callithrix jacchus MORF4L1P10
Mouse lemur Microcebus murinus MORF4L1P4
Mouse Mus musculus Morf4l1P14
Rat Rattus norvegicus Morf4l1P14
Chinese hamster Cricetulus griseus Morf4l1_1P8
Pig Sus scrofa MORF4L1P1
Cow Bos taurus MORF4L1P5
Sheep Ovis aries MORF4L1P5
Dolphin Tursiops truncatus MORF4L1P3
Horse Equus caballus MORF4L1P1
Dog Canis familiaris MORF4L1P4
Panda Ailuropoda melanoleuca MORF4L1P2
Cat Felis catus MORF4L1P4
Pale spear-nosed bat Phyllostomus discolor MORF4L1P10
Greater horseshoe bat Rhinolophus ferrumequinum MORF4L1P1
Egyptian rousette Rousettus aegyptiacus MORF4L1P1
Sloth Choloepus didactylus MORF4L1P18
Baboon Papio anubis Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>MORF4L1P4
ACAACCAAGTAAAATGCTTTATATATTACAGTGGTTGAAATAAAAACAGGGTTGAATGAGTTCCAGAAAGCAGGGTTCTCAAACTCGTGGACAACAATCTGCAGAAGAAGACAACTTCAAAAAACCAACTAGAAGCAATATGCAAAGAAGTAAGATGAGAGGGGCTTCTTCAGGAAAGAGGACAGCTGGTCCACAGCAGAAGAATCTGGAACCAGCCCTCCCAGGCAGATGGGGGGGTCGCTCTGCAGAGAATCCCCCTTCTGGGTCTGTGAGGAAGACAAGAAAGAACAAGCAGAAGACTCCTGGAAATGGAGATGGCGGCAGTACCAGTGAAGTCCCTCAGCCACCTCGGAAGAAAAGGGCCCGGGCTGACCCCACTGTTGAAAGCGAGGATGCATTTAAGAATAGAATGGAAGTTAAAGTGAAGATTCCTGAAGAATTAAAACCATGGCTTGTTGAGGACTGGGACTTAGTTACCAGGCAGAAGCAGCTGTTCCAGCTCCCTGCTAAGAAAAATGTAGATGCCATTCTAGAAGAGTATGCAAGCTGCAAGAAATCACAGGGAAATGTCGACAATAAAGAATATGCAGTGAATGAAGTCGTCGCAGGAATAAAAGAATACTTCAATGTGATGTTGGGCACTCAGCTGCTCTACAAATTTGAGAGGCCCCAGTATGCCGAAATCCTGTTGGCTCACCCTGATGCACCGATGTCCCAGGTTTACGGAGCGCCACACCTACTGAGATTATTTGTAAGAATCGGAGCAATGCTGGCATATACGCCCCTTGATGAGAAGAGCCTTGCATTGTTG
>MORF4L1_x10
ATGGCGCCGAAGCAGGACCCGAAGCCTAAATTCCAGGAGGGTGAGCGAGTGCTGTGCTTCCACGGGCCTCTTCTTTATGAAGCCAAGTGTGTAAAGGTTGCCATTAAGGACAAACAAGTGAAATACTTTATACATTACAGTGGTTGGAATAAAAATTGGGACGAATGGGTTCCAGAAAGCAGAGTGCTCAAGTACGTGGACACCAATCTGCAAAAACAGCGAGAACTTCAAAAAGCCAATCAGGAGCAGTACGCAGAGGGCAAGATGAGAGGGGCTGCCCCAGGGAAGAAGGCATCTGGTCTGCAGCAGAAGAACGTTGACGTGAAAACAAAAAAGAACAAACAGAAAACACCTGGAAATGGAGACGGTGGCAGCACCAGTGAGACCCCTCAGCCCCCTCGCAAGAAGAGAGCTCGGGTAGACCCTACTGTTGAGAATGAGGAAACATTCATGAACAGAGTCGAAGTTAAAGTAAAGATTCCTGAAGAACTGAAACCATGGCTTGTTGATGACTGGGACTTAATTACCCGCCAGAAACAGCTCTTTTATCTTCCTGCCAAGAAGAATGTGGATTCCATTCTGGAGGATTATGCAAATTACAAGAAATCTCGAGGAAACACGGATAATAAGGAGTATGCTGTTAATGAAGTAGTGGCAGGGATAAAGGAATACTTCAATGTGATGTTGGGCACTCAGCTGCTCTACAAATTTGAGAGGCCACAGTATGCTGAAATCCTCGCGGATCACCCTGATGCGCCCATGTCCCAGGTGTATGGAGCGCCGCACCTACTGAGATTATTTGTACGAATTGGAGCGATGCTGGCCTACACACCTCTGGATGAGAAGAGCCTTGCTTTGTTACTGAATTACCTTCACGATTTCCTGAAATACCTGGCAAAGAATTCTGCGACTTTGTTCAGTGCCAGCGACTACGAAGTGGCTCCTCCTGAGTACCACCGGAAAGCTGTGTGA

Publications

PMID - Link Title
No publications available for this retrocopy