RCPedia: Rtcs

Summary

Retrocopy Name	SUMO2P8	Plot displaying the genomic locations of a retrocopy (in scaffold_m16_p_3) and its respective parental gene (in scaffold_m16_p_19). Each line represents a retrocopy.
Species	Molossus molossus
Coordinates	scaffold_m16_p_3:53496190-53496451 UCSC
Strand	+
Parental Sequence	SUMO2_x3
Parental seq. overlap	220 bp
Parental seq. overlap (%)	75.3%
Genomic Region	Intergenic
Retrocopy Summary	SUMO2P8, located on scaffold_m16_p_3:53496190-53496451, is a retrocopy of the parental gene SUMO2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name	SUMO2
Full Name	N/A
Also known as	NULL
Coordinate	scaffold_m16_p_19:5150829-5175757
Strand	+
Gene summary	N/A

Homology

Species	Scientific Name	Retrocopy
Chimpanzee	Pan troglodytes	SUMO2P6
Bonobo	Pan paniscus	SUMO2P7
Golden snub-nosed monkey	Rhinopithecus roxellana	SUMO2P3
Marmoset	Callithrix jacchus	SUMO2P1
Mouse lemur	Microcebus murinus	SUMO2P15
Dolphin	Tursiops truncatus	SUMO2P5
Horse	Equus caballus	SUMO2P6
Pale spear-nosed bat	Phyllostomus discolor	SUMO2P6
Greater horseshoe bat	Rhinolophus ferrumequinum	SUMO2P5
Egyptian rousette	Rousettus aegyptiacus	SUMO2P3
Human	Homo sapiens	Without Homology
Gorilla	Gorilla gorilla	Without Homology
Orangutan	Pongo abelii	Without Homology
Gibbon	Nomascus leucogenys	Without Homology
Green monkey	Chlorocebus sabaeus	Without Homology
Crab-eating macaque	Macaca fascicularis	Without Homology
Rhesus	Macaca mulatta	Without Homology
Baboon	Papio anubis	Without Homology
Mouse	Mus musculus	Without Homology
Rat	Rattus norvegicus	Without Homology
Chinese hamster	Cricetulus griseus	Without Homology
Rabbit	Oryctolagus cuniculus	Without Homology
Pig	Sus scrofa	Without Homology
Cow	Bos taurus	Without Homology
Sheep	Ovis aries	Without Homology
Dog	Canis familiaris	Without Homology
Panda	Ailuropoda melanoleuca	Without Homology
Cat	Felis catus	Without Homology
Greater mouse-eared bat	Myotis myotis	Without Homology
Kuhl's pipistrelle	Pipistrellus kuhlii	Without Homology
Sloth	Choloepus didactylus	Without Homology
Tasmanian Devil	Sarcophilus harrisii	Without Homology
Opossum	Monodelphis domestica	Without Homology
Platypus	Ornithorhynchus anatinus	Without Homology
Chicken	Gallus gallus	Without Homology
Turkey	Meleagris gallopavo	Without Homology
Zebra Finch	Taeniopygia guttata	Without Homology
Budgerigar	Melopsittacus undulatus	Without Homology
Painted Turtle	Chrysemys picta	Without Homology
Lizard	Anolis Carolinensis	Without Homology
Frog	Xenopus tropicalis	Without Homology
Zebrafish	Danio rerio	Without Homology
Drosophila	Drosophila melanogaster	Without Homology

Expression

Related Sequence

>SUMO2P8
TGAAACGCCTAAGGAAGGAGTCAAGACCGAGAACAACCATCATATTACTTTGAAGGGGGCGGGGCAGAATAGTTCTGTGGTGCAGTTTACGATTACGAGGTATTTTTATACCACTTAGTAAACTAATGAGAGCCCATTGTGGATAAGAGGATTTGTCACAGAGGCAGATCAGTTTCCGATTTGATGGGCAGCTGATCGGTGAAACAGAAACACCTGCACAGGTAGCAACGGAAGAAGAAGATAAACTGATGTGCTCCAGCAG

>SUMO2_x3
ATGGCCGACGAAAAGCCCAAGGAAGGAGTCAAGACTGAGAACAACGATCATATTAATTTGAAGGTGGCGGGGCAGGATGGTTCTGTGGTGCAGTTTAAGATTAAGAGGCATACACCACTTAGTAAACTAATGAAAGCCTATTGTGAACGACAGGGTTTGTCGATGAGGCAGATCAGATTCCGATTTGACGGGCAGCCAATCAATGAAACAGACACACCTGCACAGTTGGAAATGGAGGATGAAGATACAATTGATGTGTTCCAGCAGCAGACAGGAGGTGTCTACTAA

>SUMO2_x3 

ATGGCCGACGAAAAGCCCAAGGAAGGAGTCAAGACTGAGAACAACGATCATATTAATTTGAAGGTGGCGGGGCAGGATGGTTCTGTGGTGCAGTTTAAGATTAAGAGGCATACACCACTTAGTAAACTAATGAAAGCCTATTGTGAACGACAGGGTTTGTCGATGAGGCAGATCAGATTCCGATTTGACGGGCAGCCAATCAATGAAACAGACACACCTGCACAGTTGGAAATGGAGGATGAAGATACAATTGATGTGTTCCAGCAGCAGACAGGAGGTGTCTACTAA

Publications

PMID - Link	Title
No publications available for this retrocopy