Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name SUMO2P5
Plot displaying the genomic locations of a retrocopy (in chr3) and its respective parental gene (in chr20). Each line represents a retrocopy.
Species Tursiops truncatus
Coordinates chr3:62068532-62068667  UCSC
Strand +
Parental Sequence XM_019938752.2
Parental seq. overlap 123 bp
Parental seq. overlap (%) 11.7%
Genomic Region Intergenic
Retrocopy Summary SUMO2P5, located on chr3:62068532-62068667, is a retrocopy of the parental gene SUMO2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SUMO2
Full Name N/A
Also known as -
Coordinate chr20:51559178-51570155
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes SUMO2P6
Bonobo Pan paniscus SUMO2P7
Gorilla Gorilla gorilla SUMO2P25
Gibbon Nomascus leucogenys SUMO2P2
Green monkey Chlorocebus sabaeus SUMO2P3
Crab-eating macaque Macaca fascicularis SUMO2P10
Rhesus Macaca mulatta SUMO2P14
Golden snub-nosed monkey Rhinopithecus roxellana SUMO2P3
Marmoset Callithrix jacchus SUMO2P1
Mouse lemur Microcebus murinus SUMO2P15
Horse Equus caballus SUMO2P6
Pale spear-nosed bat Phyllostomus discolor SUMO2P6
Velvety free-tailed bat Molossus molossus SUMO2P8
Greater horseshoe bat Rhinolophus ferrumequinum SUMO2P5
Egyptian rousette Rousettus aegyptiacus SUMO2P3
Human Homo sapiens Without Homology
Orangutan Pongo abelii Without Homology
Baboon Papio anubis Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SUMO2P5
CCTAATGGAAGCCTGTTGTAAACAACAGGGTTTGTCAGTGAGGCAGACCAGATTCTGATTTCATGGGCAGCCAATCAATGAAACAGACACACCTGCACAAGTGGAAATGGAGGATGAAGATACAATTAATGTGTTC
>XM_019938752.2
CGCACgcaggatggggggagggagcgCACAACGTGCGCgcgccctctccctcctccaccgcTGCCGCCTCCTTCTTCTGCCGCTCCTGGTGCTGCTTGTGTGCTCGTTCGGTGCGGATCTGGTACCTCTTTTGTGAAGCGGCAGCTGAGGAGACTCCGGCGCTCGCCATGGCCGACGAAAAGCCCAAGgaaggagtcaagactgagaacaacgatcatattaatttgaaggtggCGGGGCAGGATGGTTCTGTGGTGCAGTTTAAGATTAAGAGGCATACACCACTTAGTAAACTAATGAAAGCCTATTGTGAACGACAGGGTTTGTCAATGAGGCAGATCAGATTCCGATTTGACGGGCAGCCAATCAATGAAACAGACACACCTGCACAGTTGGAAATGGAGGATGAAGATACAATTGATGTGTTCCAGCAGCAGACAGGAGGTGTCTACTAAAAAGGGAACCTGCTACTTTACTCCAGAATTCTGTTCCTCCAGACCAAGAAGACATTCTCAATTAGAAAACTGCAATTTGGTTCCACCACATCCTGACTACTACAGTATAGTTCctctattctttcattttccccttcccCATTCCTTTATTGTACATAAAGTAACTGGTGTATGTGCACAagcatattgcatttttttttttaactaaatggcCAACGGTATGTTTTGATCGACATCAAATGGAGATGGAATGGGGAAAAATACTGGTTCTGTGAAGATACCCCCTTTTCTCCATTAGTGGCATGCTCAAATGCTCTTATCTTTATATTCCAGTAAGTTATTTTGCTCTCACTgtttaacaaaaaaagaacaacataaaaATTCTTGCATACCTTGTTCGATTggagaattttaatgtttttcatttatcattGTAAAACCAAGGacaattttataacttttttgtaCGTAGCTGTTACATGTAGGGCAATCTGTCTTTAAGTAGGGATAAATTACTCTAAAAGAAATGAATCCTAGATAGTTTTCCCTTCAAGTCAAGCGTCTTGTTGTTTAAATAAACTTCTTGTTTAAAATga

Publications

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