Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Retrocopy Name SUMO2P3
Plot displaying the genomic locations of a retrocopy (in scaffold_m13_p_8) and its respective parental gene (in scaffold_m13_p_6). Each line represents a retrocopy.
Species Rousettus aegyptiacus
Coordinates scaffold_m13_p_8:66932086-66932297  UCSC
Strand -
Parental Sequence SUMO2_x1
Parental seq. overlap 181 bp
Parental seq. overlap (%) 62%
Genomic Region Intergenic
Retrocopy Summary SUMO2P3, located on scaffold_m13_p_8:66932086-66932297, is a retrocopy of the parental gene SUMO2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SUMO2
Full Name N/A
Also known as NULL
Coordinate scaffold_m13_p_6:111077856-111086784
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens SUMO2P25
Chimpanzee Pan troglodytes SUMO2P6
Bonobo Pan paniscus SUMO2P7
Gorilla Gorilla gorilla SUMO2P25
Orangutan Pongo abelii SUMO2P8
Green monkey Chlorocebus sabaeus SUMO2P3
Crab-eating macaque Macaca fascicularis SUMO2P10
Rhesus Macaca mulatta SUMO2P14
Golden snub-nosed monkey Rhinopithecus roxellana SUMO2P3
Marmoset Callithrix jacchus SUMO2P1
Mouse lemur Microcebus murinus SUMO2P15
Dolphin Tursiops truncatus SUMO2P5
Horse Equus caballus SUMO2P6
Pale spear-nosed bat Phyllostomus discolor SUMO2P6
Velvety free-tailed bat Molossus molossus SUMO2P8
Greater horseshoe bat Rhinolophus ferrumequinum SUMO2P5
Gibbon Nomascus leucogenys Without Homology
Baboon Papio anubis Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SUMO2P3
TTGAAGGTGGTGGGGCAGGCTGTTGTTGTGGTGCAGTTTAAGAGTAAGAGGCATTTTTATACCACGTAGCAAACTAACAGAAGCCTGTTGTAAATGACAGGGTTTGTCAGTGAGGCAGATAAGCTTCTGATTTGATCGGCAGCCAATCAATGAAACAGACACCTACACAGGAGGAAACGGAGGATGAAGATATAATTGATGTGTTCCAGCAC
>SUMO2_x1
ATGGCCGACGAAAAGCCCAAGGAAGGAGTCAAGACTGAGAACAACGATCATATTAATTTGAAGGTGGCGGGGCAGGATGGTTCTGTGGTGCAGTTTAAGATTAAGAGGCATACACCACTTAGTAAACTAATGAAAGCCTATTGTGAACGACAGGGTTTGTCAATGAGGCAGATCAGATTCCGATTTGACGGGCAGCCAATCAATGAAACAGACACACCTGCACAGTTGGAAATGGAGGATGAAGATACAATTGATGTGTTCCAGCAGCAGACAGGAGGTGTCTACTAA

Publications

PMID - Link Title