Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC05213P1
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Plot displaying the genomic locations of a retrocopy (in scaffold_m13_p_3) and its respective parental gene (in scaffold_m13_p_7). Each line represents a retrocopy.
Species Rousettus aegyptiacus
Coordinates scaffold_m13_p_3:110244994-110246451  UCSC
Strand -
Parental Sequence LOC05213_x6
Parental seq. overlap 587 bp
Parental seq. overlap (%) 25%
Genomic Region Intragenic (ACTC1)
Retrocopy Summary LOC05213P1, located on scaffold_m13_p_3:110244994-110246451, is a retrocopy of the parental gene LOC05213. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC05213
Full Name N/A
Also known as NULL
Coordinate scaffold_m13_p_7:71848001-71851345
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes ACTBP15
Orangutan Pongo abelii ACTBP18
Gibbon Nomascus leucogenys ACTBP9
Crab-eating macaque Macaca fascicularis ACTBP10
Rhesus Macaca mulatta ACTBP10
Baboon Papio anubis ACTBP10
Golden snub-nosed monkey Rhinopithecus roxellana ACTBP11
Marmoset Callithrix jacchus ACTBP28
Mouse lemur Microcebus murinus ACTBP1
Mouse Mus musculus ActbP1
Rat Rattus norvegicus Actg1P3
Chinese hamster Cricetulus griseus Actb_1P4
Rabbit Oryctolagus cuniculus ACTBP10
Pig Sus scrofa ACTG1P1
Cow Bos taurus ACTG1P1
Sheep Ovis aries ACTG1P1
Dolphin Tursiops truncatus ACTG1P1
Horse Equus caballus ACTBP1
Dog Canis familiaris ACTG1P5
Panda Ailuropoda melanoleuca ACTG1P3
Cat Felis catus ACTG1P3
Pale spear-nosed bat Phyllostomus discolor LOC04827P1
Velvety free-tailed bat Molossus molossus ACTBL2P1
Greater mouse-eared bat Myotis myotis LOC01585P1
Kuhl's pipistrelle Pipistrellus kuhlii ACTBLP1
Greater horseshoe bat Rhinolophus ferrumequinum LOC01822P7
Sloth Choloepus didactylus ACTG1P1
Human Homo sapiens Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC05213P1
AGGGCGTCATGGTGGGTATGGGTCAGAAGGATTCCTACGTAGGAGATGAGGCCCAGAGCAAGCGAGGTATCCTGACTCTCAAATACCCCATCGAGCACGGCATCATCACCAACTGGGACGACATGGAAAAGATCTGGCATCATACCTTCTACAATGAGCTCCGCGTAGCCCCTGAGGAGCACCCTACTCTCCTCACCGAGGCCCCACTGAACCCCAAGGCCAACCGTGAGAAGATGACCCAAATCATGTTTGAGACCTTCAATGTCCCCGCCATGTACGTGGCTATCCAGGCGGTGCTGTCCCTGTATGCTTCTGGCCGTACCACAGGTATGTTTGGGCTTTGGGGACAGTCACTGATGAATCACATTCACAAGTCATTGACCTTGCTGTGAATCAGCTTCCCCAAATGAAAAAAGAATGACCCCTTCTCTCACACTCCCTGGGAAAGTGTCTGTGCTAAGAGAAAAAGGTAATCACAGTACCTCAAGATTAGCTTCAAGAGCACAGGTATCTAAGAGCTGAAAGTATGTGAGGTCATATGATGAGGCTTTACACAATGTATCAGCTTGGAATGTAGCAGTCATTGGTATGTGTTCATACCATCACAGGCCCTGGGAAAAATTGCCAAGGAGAACCCATATTCCCTACAGGGCCTGAGTCAAGAAAGAGAGAAACATGTGTAAGTAAGTTAGATGGGAGGAAAGAAAAACAGACTTGGATGCCTTACATAACGTGCTAATGGCTGACAGAGGGATGGTCATTTGAAAGTGTCCTGGGGAAATTTTTTTACCACAATATTAAAAAGGATGAGCTGTTGCAAGCTTCATATTTAGCATCTATTATGCTCATTTTTATTCTTCTTGTGTAAGGGATCTAATTTTATCTGGATCCATGCCCAATGCTAGTTTATCTTAGCCAAGACTGGAAGTAGGCTTTGCCACAACTAAAAGCAATGGTGTCCTCAGAGATTTACCTCCTTTTTGTCTATTCCTCTGACAGGCATTGTTCTGGACTCTGGGGATGGTGTAACTCACAATGTCCCCATCTATGAAGGCTACGCTTTGCCCCATGCCATCATGCGTCTGGATCTAGCTGGTCGGGATCTCACTGACTACCTCATGAAGATCCTCACTGAGCGTGGCTACTCCTTTGTCACCACCGGTAAGTGTGTGTTTCATCTGCCACAGCACATGTCTCCTTTTTCCTTCCAGCAGCAAATTCAATGACTTCTTCTTCAGAGCTTAACTGTGATACCCTTCATTTCTACAGCTGAACGTGAAATTGTCCGTGACATTAAGGAGAAGCTGTGCTATGTTGCCCTGGATTTTGAGAATGAGATGGCCACGGCTGCTTCTTCCTCCTCCCTGGAGAAGAGCTATGAACTGCCTGACGGCCAAGTCATCACTATTGGCAACGAGCGCTTCCGCTGCCCTGAGACGCTCTTCCAGCCCTCCTTCA
>LOC05213_x6
GCCGAGACCGCGTCCAGCCGCCAACACAGGCCTCTCGCCTTCGCTGCTCCGCCGCCAGTCTACACCGTCTGCAGCTCACCATGGATGATGATATCGCCGCTCTCGTGGTCGACAACGGCTCCGGCATGTGCAAGGCCGGCTTCGCGGGCGACGATGCCCCCCGAGCCGTCTTTCCCTCCATCGTGGGGCGCCCCCGACACCAGGGCGTGATGGTGGGCATGGGCCAGAAGGATTCCTACGTGGGCGATGAGGCCCAGAGCAAGAGAGGCATCCTGACCCTGAAGTACCCCATCGAGCATGGCATCGTCACCAACTGGGATGACATGGAGAAGATCTGGCACCATACTTTCTACAACGAGTTGCGTGTGGCCCCCGAGGAGCACCCTGTGCTGCTGACCGAGGCCCCCCTGAATCCCAAGGCCAACCGTGAGAAGATGACCCAGATTATGTTCGAGACCTTCAACACTCCAGCAATGTACGTGGCCATCCAGGCCGTGCTGTCCCTGTACGCCTCTGGCCGTACCACTGGCATTGTGATGGACTCCGGTGATGGAGTCACCCACACTGTGCCCATCTATGAGGGGTACGCCCTCCCCCACGCCATCCTGCGTCTGGACCTGGCTGGCCGGGACCTGACGGACTACCTCATGAAGATCCTCACGGAGCGTGGCTACAGCTTCACCACCACGGCTGAGCGGGAGATTGTGCGTGACATCAAGGAGAAGCTGTGCTACGTCGCCCTGGACTTCGAGCAGGAGATGGCCACGGCGGCCTCTAGCTCCTCCCTGGAGAAGAGCTATGAGCTGCCTGACGGCCAGGTCATCACCATTGGCAACGAGCGCTTCCGCTGCCCCGAGGCCCTCTTCCAGCCCTCCTTCCTGGGCATGGAATCCTGTGGCATCCATGAAACTACCTTCAACTCCATCATGAAGAGTACGACGAGTCCGGCCCCTCCATCGTCCACCGCAAATGCTTCTAGGCGGACTGTTACTTAGTTGGTTACACCCTTTCTTGACAACCTAACTTGCGCAGAAAACGAGATGAGATTGGCATGGCtttatttgtttctttttttttttttttaattttttttttttttGGCGCTTGACTCAGGATTTAAAAACTGGAACGGTGAAGGTGACAGCAGTCGGTTGGAGTGAGCATCCCCAAAGTCTACAGTGTGGCCGAGGACTTTGATTGTACATTGTTCTTTTTTTTAATAGTCATTCCAAATATCGTGAGATGCATTGTTACAGGAAGTCCCTTGCCTGCCCAAAAGCTGCCCCACTTCTCCCTACTAAGGGCCAGTCCTCGCCCGAGTCCACACAGGGGAGGGTGATAGCATTGCTTTTGTGTAAATTATGTAATCCAAATTTTTTTAATCTTCGCCTTAATACTTGTTTTTTTTTGTTTTATTTTGAATGGTCAGCCATCATGGCCCCCCTTTTTATCCCCCAACTTGAGATGTATGAAGGCTTTTGGTCTCCCGGGGAGGTGGTTGAGGTGTGGAGGCAGCCAGGGCTTACCTGTACACTGAAACTTGAGACCAGTTCAATAAAGTGCACACCTT

Publications

PMID - Link Title
No publications available for this retrocopy