Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Retrocopy Name ACTG1P1
Plot displaying the genomic locations of a retrocopy (in chr1) and its respective parental gene (in chr12). Each line represents a retrocopy.
Species Sus scrofa
Coordinates chr1:136283201-136283526  UCSC
Strand +
Parental Sequence XM_003357928.4
Parental seq. overlap 284 bp
Parental seq. overlap (%) 14.1%
Genomic Region Intragenic (ACTC1)
Retrocopy Summary ACTG1P1, located on chr1:136283201-136283526, is a retrocopy of the parental gene ACTG1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ACTG1
Full Name actin gamma 1
Also known as actin
Coordinate chr12:1320355-1323219
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes ACTBP15
Orangutan Pongo abelii ACTBP18
Gibbon Nomascus leucogenys ACTBP9
Crab-eating macaque Macaca fascicularis ACTBP10
Rhesus Macaca mulatta ACTBP10
Baboon Papio anubis ACTBP10
Golden snub-nosed monkey Rhinopithecus roxellana ACTBP11
Marmoset Callithrix jacchus ACTBP28
Mouse lemur Microcebus murinus ACTBP1
Mouse Mus musculus ActbP1
Rat Rattus norvegicus Actg1P3
Chinese hamster Cricetulus griseus Actb_1P4
Rabbit Oryctolagus cuniculus ACTBP10
Cow Bos taurus ACTG1P1
Sheep Ovis aries ACTG1P1
Dolphin Tursiops truncatus ACTG1P1
Horse Equus caballus ACTBP1
Dog Canis familiaris ACTG1P5
Panda Ailuropoda melanoleuca ACTG1P3
Cat Felis catus ACTG1P3
Pale spear-nosed bat Phyllostomus discolor LOC04827P1
Velvety free-tailed bat Molossus molossus ACTBL2P1
Greater mouse-eared bat Myotis myotis LOC01585P1
Kuhl's pipistrelle Pipistrellus kuhlii ACTBLP1
Greater horseshoe bat Rhinolophus ferrumequinum LOC01822P7
Egyptian rousette Rousettus aegyptiacus LOC05213P1
Sloth Choloepus didactylus ACTG1P1
Zebra Finch Taeniopygia guttata ACTBP2
Human Homo sapiens Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>ACTG1P1
TAGGGGGTCATGGTGGGTATGGGTCAGAAGGATTCCTACGTGGGTGACGAGGCCCAGAGCAAGCGAGGTATTCTGACCCTCAAGTATCCCATTGAGCATGGCATCATCACCAACTGGGATGACATGGAGAAGATCTGGCACCACACCTTCTACAACGAGCTCCGTGTAGCCCCCGAGGAGCACCCTACTCTGCTCACTGAGGCCCCCCTGAACCCCAAGGCCAACCGCGAGAAGATGACCCAGATCATGTTTGAAACCTTCAATGTCCCTGCCATGTATGTGGCCATCCAGGCGGTGCTGTCCCTCTATGCTTCTGGCCGTACCAC
>XM_003357928.4
cgggccgcgcgcgccccccgctccgcTTAAATAGGGGCGGGGGAGGCCGCGGTCGGTCTCGCTCGCCGCAGCCGGCCCGCGCTCCGTGTCTTCTCGCCGCTCCTCCGCTCGCTCCTCCGCGCCCCGCGGCCGCCGTCTCCGCCGATCGCCATGGAAGAAGAGATCGCCGCGCTGGTCATCGACAATGGCTCCGGCATGTGCAAAGCTGGCTTTGCTGGGGATGACGCCCCCCGGGCCGTGTTCCCGTCCATCGTCGGGCGTCCCCGACACCAGGGTGTCATGGTGGGCATGGGCCAGAAGGACAGCTACGTGGGCGACGAGGCTCAGAGCAAGCGGGGCATCCTGACCCTCAAGTACCCCATCGAACACGGCATCGTCACCAACTGGGACGACATGGAGAAGATCTGGCATCACACCTTCTACAACGAGCTGCGCGTGGCCCCCGAGGAGCACCCCGTGCTGCTCACGGAGGCCCCCCTGAACCCCAAGGCCAACCGTGAGAAGATGACTCAGATCATGTTCGAGACCTTCAACACGCCGGCCATGTACGTGGCCATCCAGGCCGTGCTGTCCCTGTACGCCTCTGGCCGCACCACTGGCATTGTCATGGACTCTGGGGATGGGGTCACCCACACGGTGCCCATCTACGAGGGGTACGCCCTGCCCCACGCCATCCTGCGTCTGGACCTGGCTGGCCGGGACCTGACCGACTACCTCATGAAGATCCTCACGGAGCGGGGCTACAGCTTCACCACCACGGCCGAGCGGGAGATCGTGCGGGACATCAAGGAGAAGCTCTGCTACGTCGCCCTGGACTTCGAGCAGGAGATGGCCACCGCCGCGTCCTCCTCCTCCCTGGAGAAGAGCTACGAGCTGCCCGACGGCCAGGTCATCACCATCGGCAACGAGCGCTTCCGGTGTCCAGAGGCGCTCTTCCAGCCCTCCTTCTTGGGCATGGAGTCCTGCGGCATCCACGAGACCACCTTCAACTCGATCATGAAGTGCGACGTGGACATCAGGAAGGACCTCTACGCCAACACGGTGCTGTCTGGCGGGACCACCATGTACCCCGGCATCGCCGACAGGATGCAGAAGGAGATCACGGCCCTGGCGCCCAGCACCATGAAGATCAAGATCATCGCGCCTCCCGAGCGCAAGTACTCGGTGTGGATCGGGGGCTCCATCCTGGCCTCGCTGTCCACCTTCCAGCAGATGTGGATCAGCAAGCAGGAGTACGACGAGTCGGGCCCGTCCATCGTCCACCGCAAATGCTTCTAGACGGACTGCGAGCAGATGCGTAGCATTTGCTGCATGAGCTAATCCAGAAATAAAGTTTGCCCTGGCAAATGTACACACCTCATGCCAGCCTCCTGAAACTGGAATAAGCCTTTGAAAAGAAATTTGTCCTTGAAGCTTGTATCTGGTATCAGCACTGGATTGTAGACCTTGTTGCTGATTTTGACCTTGTACTCGAGTTAACTCTTCCCTTGGTCTCTGTTTAATACCCTGTGCATATCTTTGATTTAAACCCCTAGTTACACACACGCGGCTCTGTCACCTCGTGGCTGAGGTGAGAACCTGTTTATCGTGGAAGAGAAATCCGTTGGCTGGTTGAGAATCTGAGACGGAGTCTCTCCGATCTGTGCAGGGTATTCATGTGTCCGAGCTCCTATTCCAGGATTTCTCTCGAGGCTGGCAAGAGTCCTGAACCAGTTGTCATTTCTGTCTTGCCGGTCTGACGGGGTTGGGAAGGTCCGAGCCTTAGGACCCACTGTCCTTTCTTCCCCGATGTTTGCCCGCCAGAAAACCGTGGGTTGTTAACTTGCCTTGAGTTGGAAGCGTTTGCATTCACACCTGTAAATTTATTCATCCTTTTAATTTATGTAAGGTTTTTGTACGCAATTCTCAATTCCTTAAGAGATGACAACAGATTTTGGTTTTCTACTGTCACGTGAGAACGTTAGGCCCCAGCAACGCGTCATTGTGAGGAAATAAAGTGCTGCAGTAAACCCTT

Publications

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