RCPedia: Rtcs

Summary

Retrocopy Name	FBLP1	Plot displaying the genomic locations of a retrocopy (in scaffold_m20_p_8) and its respective parental gene (in scaffold_m20_p_38). Each line represents a retrocopy.
Species	Pipistrellus kuhlii
Coordinates	scaffold_m20_p_8:6437080-6437514 UCSC
Strand	-
Parental Sequence	FBL_x1
Parental seq. overlap	349 bp
Parental seq. overlap (%)	35.8%
Genomic Region	Intergenic
Retrocopy Summary	FBLP1, located on scaffold_m20_p_8:6437080-6437514, is a retrocopy of the parental gene FBL. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name	FBL
Full Name	N/A
Also known as	NULL
Coordinate	scaffold_m20_p_38:2101229-2114514
Strand	+
Gene summary	N/A

Homology

Species	Scientific Name	Retrocopy
Human	Homo sapiens	FBLP2
Chimpanzee	Pan troglodytes	FBLP2
Bonobo	Pan paniscus	FBLP2
Gorilla	Gorilla gorilla	FBLP2
Orangutan	Pongo abelii	FBLP2
Gibbon	Nomascus leucogenys	FBLP1
Green monkey	Chlorocebus sabaeus	FBLP2
Rhesus	Macaca mulatta	FBLP2
Baboon	Papio anubis	FBLP2
Rabbit	Oryctolagus cuniculus	FBLP1
Cow	Bos taurus	FBLP1
Sheep	Ovis aries	FBLP1
Dolphin	Tursiops truncatus	FBLP2
Horse	Equus caballus	FBLP1
Dog	Canis familiaris	FBLP1
Panda	Ailuropoda melanoleuca	FBLP1
Cat	Felis catus	FBLP1
Pale spear-nosed bat	Phyllostomus discolor	FBLP1
Velvety free-tailed bat	Molossus molossus	FBLP1
Greater mouse-eared bat	Myotis myotis	FBLP1
Greater horseshoe bat	Rhinolophus ferrumequinum	FBLP1
Egyptian rousette	Rousettus aegyptiacus	FBLP1
Sloth	Choloepus didactylus	FBLP1
Crab-eating macaque	Macaca fascicularis	Without Homology
Golden snub-nosed monkey	Rhinopithecus roxellana	Without Homology
Marmoset	Callithrix jacchus	Without Homology
Mouse lemur	Microcebus murinus	Without Homology
Mouse	Mus musculus	Without Homology
Rat	Rattus norvegicus	Without Homology
Chinese hamster	Cricetulus griseus	Without Homology
Pig	Sus scrofa	Without Homology
Tasmanian Devil	Sarcophilus harrisii	Without Homology
Opossum	Monodelphis domestica	Without Homology
Platypus	Ornithorhynchus anatinus	Without Homology
Chicken	Gallus gallus	Without Homology
Turkey	Meleagris gallopavo	Without Homology
Zebra Finch	Taeniopygia guttata	Without Homology
Budgerigar	Melopsittacus undulatus	Without Homology
Painted Turtle	Chrysemys picta	Without Homology
Lizard	Anolis Carolinensis	Without Homology
Frog	Xenopus tropicalis	Without Homology
Zebrafish	Danio rerio	Without Homology
Drosophila	Drosophila melanogaster	Without Homology

Expression

Related Sequence

>FBLP1
GAGTACCGCACCTGGAACCCCTTCCGCTCCAAGCTGGCCGCGGCCATCCTGGGCGGCGTCGACCAGATCCACATCAAGCCCAAGTGCAAGGTGCTGTACCTGGGCGCCGCCTCGGGCACCACCGTCTCGCACGTCTCCGACATCATCGGCCCCGACGGCCTGGTCTACGCGGTCGAGTTCTCCCACCGCGCCGGCCGCGACCTGGTCAACGTGGCCAAGAGCCGCACCAACATCATCCCGGTCCTGGAGGACGCCCGCCACCCGCTCAAGTACCGCATGCTCGTGGGGATGGTGGACGTGATCTTCGCCGACGTGGCCCAGCCCGACCAGTCCCGCATCCTGGCGCTCAACGCGCACACCTTCCTGCGCAACGGCGGCCACTTCCTCATCTCCATCAAGGCCAACTGCATCGACTCCACCGCGTCGGCCGAGGCG

>FBL_x1
ATGAAGCCAGGTTTCAGCCCCCGTGGGGGTGGCTTTGGTGGCCGAGGGGGCTTTGGTGACCGTGGCGGTCGAGGTGGCGGCCGAGGTGGCTTTGGTGGGGGCCGAGGTGGCTTTggtggaggccgaggtcgtggtggaggcttcagaggccgtggacgaggaggaggaggagaaagaggaggaagagGTGGCGGGTTCCAGTTTGGTGGCAATCGGGGTCGTGGTAGGGGAGGAAAAAGAGGAAATCAGTCGGGGAAAAATGTGATGGTGGAACCTCACCGTCATGAGGGTGTCTTCATTTGTCGTGGAAAGGAAGATGCCCTAGTCACCAAGAATCTGGTCCCTGGAGAATCAGTTTATGGAGAAAAGAGAGTCTCAATTTCGGAGGGAGATGACAAAGTCGAGTACCGTGCCTGGAACCCCTTCCGCTCCAAGCTGGCAGCAGCAATCCTGGGCGGTGTGGACCAAATCCACATCAAGCCAGGGGCCAAGGTGCTCTACCTTGGGGCTGCCTCCGGCACCACTGTCTCTCATGTCTCTGACATCGTAGGCCCGGATGGTCTGGTCTATGCAGTTGAGTTCTCTCACCGCTCTGGCCGTGACCTCATTAACTTGGCCAAGAAGAGGACTAACATTATTCCTGTCATTGAAGATGCTCGGCACCCGCACAAATACCGCATGCTCATTGCAATGGTGGATGTGATCTTTGCCGATGTGGCCCAGCCAGACCAAACCCGGATTGTAGCCCTGAATGCCCACACCTTCCTACGTAATGGAGGACACTTTGTGATTTCCATTAAGGCTAACTGCATTGACTCCACAGCATCTGCCGAGGCAGTATTTGCCTCTGAAGTGAAAAAAATGCAACAGGAAAATATGAAACCCCAGGAGCAGTTGACTCTAGAGCCATATGAAAGAGACCACGCTGTGGTCGTGGGTGTATACAGGCCGCCCCCCAAGGTGAAGAACTGA

>FBL_x1 

ATGAAGCCAGGTTTCAGCCCCCGTGGGGGTGGCTTTGGTGGCCGAGGGGGCTTTGGTGACCGTGGCGGTCGAGGTGGCGGCCGAGGTGGCTTTGGTGGGGGCCGAGGTGGCTTTggtggaggccgaggtcgtggtggaggcttcagaggccgtggacgaggaggaggaggagaaagaggaggaagagGTGGCGGGTTCCAGTTTGGTGGCAATCGGGGTCGTGGTAGGGGAGGAAAAAGAGGAAATCAGTCGGGGAAAAATGTGATGGTGGAACCTCACCGTCATGAGGGTGTCTTCATTTGTCGTGGAAAGGAAGATGCCCTAGTCACCAAGAATCTGGTCCCTGGAGAATCAGTTTATGGAGAAAAGAGAGTCTCAATTTCGGAGGGAGATGACAAAGTCGAGTACCGTGCCTGGAACCCCTTCCGCTCCAAGCTGGCAGCAGCAATCCTGGGCGGTGTGGACCAAATCCACATCAAGCCAGGGGCCAAGGTGCTCTACCTTGGGGCTGCCTCCGGCACCACTGTCTCTCATGTCTCTGACATCGTAGGCCCGGATGGTCTGGTCTATGCAGTTGAGTTCTCTCACCGCTCTGGCCGTGACCTCATTAACTTGGCCAAGAAGAGGACTAACATTATTCCTGTCATTGAAGATGCTCGGCACCCGCACAAATACCGCATGCTCATTGCAATGGTGGATGTGATCTTTGCCGATGTGGCCCAGCCAGACCAAACCCGGATTGTAGCCCTGAATGCCCACACCTTCCTACGTAATGGAGGACACTTTGTGATTTCCATTAAGGCTAACTGCATTGACTCCACAGCATCTGCCGAGGCAGTATTTGCCTCTGAAGTGAAAAAAATGCAACAGGAAAATATGAAACCCCAGGAGCAGTTGACTCTAGAGCCATATGAAAGAGACCACGCTGTGGTCGTGGGTGTATACAGGCCGCCCCCCAAGGTGAAGAACTGA

Publications

PMID - Link	Title
No publications available for this retrocopy