Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Retrocopy Name FBLP1
Plot displaying the genomic locations of a retrocopy (in scaffold_m19_p_6) and its respective parental gene (in scaffold_m19_p_19). Each line represents a retrocopy.
Species Myotis myotis
Coordinates scaffold_m19_p_6:8079597-8080117  UCSC
Strand -
Parental Sequence FBL_x1
Parental seq. overlap 417 bp
Parental seq. overlap (%) 42.7%
Genomic Region Intergenic
Retrocopy Summary FBLP1, located on scaffold_m19_p_6:8079597-8080117, is a retrocopy of the parental gene FBL. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name FBL
Full Name N/A
Also known as NULL
Coordinate scaffold_m19_p_19:6387340-6400265
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens FBLP2
Chimpanzee Pan troglodytes FBLP2
Bonobo Pan paniscus FBLP2
Gorilla Gorilla gorilla FBLP2
Orangutan Pongo abelii FBLP2
Gibbon Nomascus leucogenys FBLP1
Green monkey Chlorocebus sabaeus FBLP2
Rhesus Macaca mulatta FBLP2
Baboon Papio anubis FBLP2
Golden snub-nosed monkey Rhinopithecus roxellana FBLP2
Mouse lemur Microcebus murinus FBLP1
Rabbit Oryctolagus cuniculus FBLP1
Pig Sus scrofa FBLP2
Cow Bos taurus FBLP1
Sheep Ovis aries FBLP1
Dolphin Tursiops truncatus FBLP2
Horse Equus caballus FBLP1
Dog Canis familiaris FBLP1
Panda Ailuropoda melanoleuca FBLP1
Cat Felis catus FBLP1
Pale spear-nosed bat Phyllostomus discolor FBLP1
Velvety free-tailed bat Molossus molossus FBLP1
Kuhl's pipistrelle Pipistrellus kuhlii FBLP1
Greater horseshoe bat Rhinolophus ferrumequinum FBLP1
Egyptian rousette Rousettus aegyptiacus FBLP1
Sloth Choloepus didactylus FBLP1
Crab-eating macaque Macaca fascicularis Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>FBLP1
CCTGGAACCCCTTCCGCTCCAAGCTGGCCGCGGCCATCCTGGGCGGGGTCGACCAGATCCACATCAAGCCCAAGTGCAAGGTGCTGTACCTGGGCGCCGCCTCGGGCACCACGGTCTCCCACGTCTCCGACATCATCGGCCCCGACGGCTTGGTCTACGCGGTCGAGTTCTCGCACCGCGCCGGCCGCGACCTGGTCAACGTCGCCAAGAGCCGCACCAACATCATCCCGGTCCTGGAAGATGCCCGGCACCCGCTCAAGTACCGTATGCTCGTGGGGATGGTGGATGTGATCTTCGCCGACGTGGCTCAGCCCGACCAGTCCCGCATCCTGGCTCTGAACGCCCACACCTTCCTGCGCAACGGGGGCCACTTTCTCATCTCCATCAAGGCCAACTGCATCGACTCCACCGCGTCGGCCGAGGCGGTGTTCGCTTCGGAGGTGAGGAAGCTGCAGCAGGAGAATTTGAAGCCCCAGGAGCAGCTGACCCTGGAGCCCTATGAGCGAGACCACGCCGTGGTG
>FBL_x1
ATGAAGCCAGGTTTCAGCCCCCGTGGGGGTGGCTTTGGTGGCCGAGGGGGCTTTGGTGACCGTGGGGGTCGAGGTGGAGGCCGAGGTGGTTTTGGTGGGGGCCGAGGTGGCTTTGGTGGGGGCCGAGGTCGTGGTGGAGGCTTCAGAGGCCGTGGACgaggaggaggaggaggaggaggaggaggaagagGTGGCGGGTTCCAGTCTGGTGGCAACCGGGGTCGTGGTAGGGGAGGAAAAAGAGGAAATCAGTCAGGGAAAAATGTGATGGTGGAACCTCATCGGCATGAGGGTGTCTTCATTTGTCGTGGAAAGGAAGATGCCCTAGTCACCAAGAATCTGGTCCCTGGAGAATCAGTTTATGGAGAAAAGAGAGTCTCAATTTCGGAGGGAGATGACAAAATCGAGTATCGTGCCTGGAACCCCTTCCGCTCCAAGCTGGCAGCAGCGATCCTGGGCGGAGTGGACCAAATCCACATCAAGCCAGGGGCCAAAGTGCTCTACCTTGGGGCTGCCTCGGGCACCACCGTCTCTCATGTCTCTGACATCGTAGGCCCGGATGGTCTGGTCTATGCAGTTGAGTTTTCCCACCGCTCTGGCCGTGACCTCATTAACTTGGCTAAGAAGAGGACTAACATTATTCCTGTCATTGAAGATGCTCGGCACCCGCACAAATACCGCATGCTCATTGCAATGGTGGATGTGATCTTTGCCGATGTGGCCCAGCCAGACCAGACCCGGATTGTAGCCCTGAATGCCCACACCTTCCTACGTAATGGAGGACACTTTGTGATTTCCATTAAGGCTAACTGCATTGACTCCACAGCATCTGCCGAGGCAGTATTTGCCTCTGAAGTGAAAAAAATGCAACAGGAAAACATGAAGCCCCAGGAGCAGTTGACTCTAGAGCCATATGAAAGAGATCACGCTGTGGTCGTGGGTGTGTACAGGCCGCCCCCCAAGGTGAAGAACTGA

Publications

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