Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC100015925P17
Plot displaying the genomic locations of a retrocopy (in chr8) and its respective parental gene (in chr3). Each line represents a retrocopy.
Species Monodelphis domestica
Coordinates chr8:23148389-23148541  UCSC
Strand -
Parental Sequence XM_016432831.1
Parental seq. overlap 123 bp
Parental seq. overlap (%) 2%
Genomic Region Intragenic (LOC100020204)
Retrocopy Summary LOC100015925P17, located on chr8:23148389-23148541, is a retrocopy of the parental gene LOC100015925. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC100015925
Full Name N/A
Also known as -
Coordinate chr3:500921515-500934147
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens ZNF66P6
Bonobo Pan paniscus ZNF732P3
Gorilla Gorilla gorilla ZNF66P1
Green monkey Chlorocebus sabaeus LOC103234268P3
Crab-eating macaque Macaca fascicularis LOC102128845P3
Rhesus Macaca mulatta ZNF195P4
Golden snub-nosed monkey Rhinopithecus roxellana LOC104669310P1
Rabbit Oryctolagus cuniculus LOC100340194P2
Cow Bos taurus LOC100140695P2
Sheep Ovis aries LOC114118023P1
Cat Felis catus LOC101085512P4
Chimpanzee Pan troglodytes Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Baboon Papio anubis Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Pig Sus scrofa Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC100015925P17
CTTACTCAACATCTAAAAATTCATAATGGAGAGAAGCCTTACAAATGTagtgaatgtggaaaagctttcaccCAGAGGGGACACCTTACTGAACATCGGAGAACTCATAGTGGGGAGAAACCATATACATGTAATGAATGTGGTAAAGCTTTT
>XM_016432831.1
ggcaaacagggctaaacaATTtgcaagggtcacacagctaataattgtctgaggctggatttgaatgtgGGTCTACTCAATTCCTGGCCTGGTATTCTACCACTGCTGCCCGATCAGTTTTGTAGATTGTTCTATTTGCATGGCTGTAATCACTGTATACATTGTGTTCTTGGTTCTGCCAACTTCCCTGCATCAGTTCAAGCTGatcttcccattcttctcttcCTGTTCATAGCCTAGTTGTGTCTTCACTCACCATACAGTTCTGTTTCAGTTGTGTGCCACCGTCTGTCTGCCCATTCCTCCATCACTGGGCATTTTTGCCAGCACCGAAAGTCCTGCTGTGTTCACACCTATGTGCTTCAGAGAATCTCTGGATCAGAGGACATGCATATGTCCTTTCAGTCACCTTAGTTGTATAAttgcaaaataaaatggaaaagctttcactaATGCCCTTTTTAAAGATTCAGTCAGGTCTCTCCCCAACTTTGTCTTGTAATGCAGAAAACAGTCTTTCTGGCTTCCTTTCTGGAATCTCTTCATTGTTGTCATGATGTACAGATTGGCTTTCACCACACATTGGTTCACACACTGTTCATTGTTTAGATCGCCCTatgtttcttttcattcttttgtgcAATAATAGaacttttcatcatttccaaaTCAGTTGCCATCTACTTTGTTTCaagtttttttgctaccacaaaaagcactgATTTGAATATTTTGGTTTATGGCTGAGCTTGCTGGTTGGTGGGTGTTTTTGAAATCCCAATTTTGGGTACGTCACCCACTCCACCAGAGCACTGAATAGTTAGCCACATTTCTCAGAGAATTCTAAAACATCAAATAGAGTCAGACCAGTTTACTCTTTGCTAACTAACAGTGTATTCATGTTTTCGTTACCTAAGATGACTTTCTTCATGTTCTTCCACAACTTGTCTATTGGAAAATAGGTCTTAGGCGCTTCCCTATAGATTTGTGGAGTATGGTCAGATTTTTTCAGATGTTTGatgcaatgttttgttttgtttttctccagtCCAATCTATATCTTTTCTTCTCATGACTTTTTGCCTTTAGATTACTTACTGTGTTATGTGGTATACGGTGCTGGGCCAAATCTATATCCTACCAAATTGCTAATGGGATAGTAATTTTTGGAAAAACTCATTCTGAAAGGGTCAGTAGATACATAATCTTCTACAGCATAAGAATAGTCATCCTTTACTTTTCAGTTCTGGCTTTCTCATCAGGAAAGAATGATGttttcttaactttaaaaaatgatagaagATAATTAGAGGAAAACTAGGTAATTAATGTTGAGATTCAAATGAATTcagcataatatattttattctggcTTCTCATCCTTATTGTGTAGTTTTAAGAAATTTGAGTTTTTGCCTTTTGAAAAGTAAATTGCTTTCTCTTGTCAGATTCCTTGGTTAAGAAATTCTAGGAACTGATAACTACATTTGGGAGTGAATCAATTTAGAGTTTCTATCTGGACGTCCTGTGGATTGGATTCTCTTTATTTGCATTCTGTTAGGTCAATTTGAATACAACAAAGagattctttgtttctttttctgttttttgtcaCTTATATAAATAAACTGAGAATATGTGCAATATTCTAAACACATGGATCTTCTGCCTCTGCCCATTCATAGGGTGGACatattttctcttatctcttcagTGAGGAAGGGAGGGTGTCACATGTACTAtttataattaagaaatattcACTTGTAGTTGTTTTGTGATTATTTCCACTTAAATTGTTGTAATCATTGTGGATGTTGCCTTCTTAGTTCTACTTTCTTCCccttctgcatcagtttgtggaAGTCTTTCTGTGCTTCTCTGGAATCATCATATTCACCATTTCTGACAGTACAGTCATGTTTTATTACGTCCATTTACCATATttggtttagccatttcccaaccattattcatctcctttgtttcctctgacaccacaaaaaaaaatgctactgtgCATTTTTTCTGAGTTCAGTAATCTCCGATTTTATTGCTGAGGTctaccctcctttcttttttactttgattCTGAAGTCTTATCTGTTTCATCATCTTCCATTGTTCTACCTTTACTACCAAACTCAGAATTCACTGTTTCATCAAGCTAGCTTTCtgatataatttctattttgttgattttactttttgttttcttaaaattttcatcTAGTGGTCTCAGATTATtatatctttgtttcttttctgaaactaaattttattttttccagtcaGCAAAAACTTCTCCCACTCCTACAtttgagaatgaaaagaaaacaaaacctgtTAAAAACTATAGTGAAGCAAACtaatttccatattggccatgccCAAAAGgaagtatgtgtatatgtatgtatgtatatgtgcatgcagAGATACATGTCTTGATCTCTTCTCTGAGAGTACTCCTCCTCTTTGTGGGCAGCATGTGGCATCATGACCTGGAATTGTGGTTGGCCTTTGTGTTGACTAGATAATCCAGTCATTCAGCTTCCTTGAATTAGTTTTCTAGGtcggttggttttttttttctgggagataccttacttttttttccatttatcaaagttttgtctttgtcttaatgtttctttttgtcttatggagtcattgaCTCCTGTTCagttcattctaatttttagggaattGTTCGCTTGGATAAGGTTTTGTTGTTCTTATGCTGAGCTATTAAttccctttccagttctttcttccatagctctcatttctttggCAATTCCCCCCACCCAAGTATTCTCATTTCacttattaacatttttaaaaaacttttttaatgctTGCTTTTATCTCTTCCAAAAATTCTAGTTTACCCAAGCTATGTTTTCCTACAAGATTGCTTGTAAATGTTTTAGTCATTCTTATCTTCAGGGTTTGTGTCTTGGTggagttctttttttctatttactaaTAGTTTTAACATACTTACTGAATTCAGAAAATCAGAATTATCTTTAGGACCTCAAGATTCTTCTGGAGAAAAAGCCTAAACTGTTCCTATTGCTACTTTCTTGGGGTATTGAATGTCGAGTTATTCTCTCTTATTCGGGATGTGCAAAATGTCAGTGCTCCCAAAGTGGTCTGATCTACGGCAAAGGCTGATTGTTGAACTTGGAGAGCTGGGAAGCCCTACTGGTCTAGAGGGAGAGTTCCCTTTGGTCTGGGATCCATGCCCTGCTTGTTCTTCAATGGGCTTCTGGTCTAGGCTAGACACTAGAGCTGAGCTCCCTACACCCTGCTGGGAAAGGAGATAGGCCTGGGGGGATGGGAAATTAGACTCCTCTGGTTTTTCagattataattttgttttttcctgccagttacttccctttttttaaactgaaaaaatcTACTCAGATTCTTGGGatcctttttttcttaagttacctttaaaaaaaaagttttctgtaagtcttatttgtatttgttattGTGTGATTGGAGGGTGGACACTGGAAAGCTCCTCCCAGGATCTCCATTTTCAGGAGGCACCCAGGGCCTTCACGGCGTTTCCTAGTCAGctgctcttcttgactccaagatctCCAGGACTCCTCATTCTGCAAGATGAAACcaactccccccctccccccagaccacTTTCTCCCCTTGGCTGTAGCACTCCTTGATGCTCCCTCTCCTGCCAGCTACCTGACTCTTCAGCCTGTCTTTATGCGCTGTCCCCCGTTAGACTGAGCAGCTTGAGGACGGGCATTCTCTCTGGCCTTTCTTTGAATGCCTAGGACTTTCCACAGTGCCTGGCGTGTGGGAGGTGCTTGATGAATGTTCAGCCTCGAGCCTTTGACCTTTGGTGTAGGACTCAGGCTTGGGCATGCACCAGGCTACAGGAACCCTCCACACGAGAAATCCTCCACAGTTCCCACACACTGACCCCTCTCAGCAGGTACACAGGAGGGAGAGCCTGTGGGGAGTCAAAAGTGTCTTTGGCGTTTCAGGAGTCGGTGACATTCcgggatgtggctgtggacttcaccccaGAGGAGTGGGGGTTCCTGGCCCCATTCCAGAGGGAGCTCTACcgggaggtgatgctggagaacttCTGGAACCTCGTGTGCCTGGGATTTGAAGTTTCCAAACCGGATGTGATCTACCAGTTGGAGCGAGGGGAAGCACCTCAGATCCCAAAGGCGGTCCCAGGAAGCTGCAGTCAAGATTGGGGAGCTGGGCCTGAAACCACAAAGTCAGCTCTAAAGccaaatattttagtacaagaATCATTCCAAGAAAGAATCACAGGGAACAGTACCTATATTTCCAAAATAGAAAAGGCCTGGAAATCTGATGCCAAGTTACAGAGGTGGCAGAGCCAGAAGAAACATTTTCAGCAAGTAAAAATCACCCCAAAGAAATCTCATAATAAactaaaagttcaagaatataatAAGCTTAGCAGTAGCATCCATTGGGGGCTGAACATTTTTCTACAACAGAGAATATATGTGAGAAAGAGTCTCTGTAAATATGATACACTTAAAAAGTATTTCAGACTATATACAGACTTAAGAAAATATAACAGAATCTGTGCAAAAAAGATATTTTCTAAGTATGATGAATGTGGGAAATCTTTCAGGGATACTTCAGAAATCACTGAAAAACATAGACTGTATATTGGAGAAAAGCATTATCAAGGTAATGAATATGGGAAAAACTTCTACCAGCATATACTGCTTAATCAACCTAATAGAATTTATACAGGAAAGAAATTTTatgaatgtagtgaatgtgggaaagcctttcgGTGGAGATCACAGCTtattaaacatcagagaattcatactggagagaaaccttatgaatgcaatgagTGTGGGAAGGCCTTTCAACAGAGAGTGCAACTTACCCAACATCAGACAGTTCATACTGGaaagaaaccttatgagtgtaatgaatgtgggaaagcttttcGTTTAAACACAGGACTTATTCATCATCAGACAATTCATACcagagagaaatcttttaaatgtaatgaatgtgggaaagccttctcTTTAAGTACATATCTTACccagcatcagagaattcatactggagagaaaccttataagtGCAAGAtttgtgggaaggccttccgcCTGAGTACAGGACTTACTCAACATAAAacaattcatactggagagaaaccttacaaatgtaatgaatgtgggaaggccttccgcTTGAGAACACAGCTTACTGAACATCAGAccattcatactggagagaagccttatgaatgtattgaatgtgggaaagctttccGTCTGAGCACAGGTCTTACTCAACATCAGATagttcatactggagagaaaccttatgaatgtaaggaatgtgggaaaTCCTTCAGTCAGAGGGCAGAACTTACCCGACATcacagaattcatactggagagaagatTTACAAATGTGATGAATGTGGCAAGGACTTCCGATGGAGCAGAGGACTTACACTACATCAAAAAATTCATAGTGGAGAAAagccttatgaatgcaatgaatgtgggaaggccttcccCCTGAGCTCATATCTCACTcagcaccagagaattcacactggagagaaatgttataaatgtgatgaatgtggaaaggcttttccCTTAAGTTCACAACTTACTcagcaccagagaattcacactggagagaaaccttataaatgtaaagtTTGTGGGAAAGCCTTCCGCCTGAGCCAAGGACTTACCCAACATCAGACAATTCATACTGGCGAGAAACggtatgaatgtaatgaatgtgggaaaaccttTCGCCAAAGGACAGGACTTACTGAACATCAGACAattcacactggtgagaaaccatatgaatgtagTGAATGTAGGAAGGCTTTTCGGCTGAGAGCACAACTTTCCCatcatcagaaaattcatacggGTGAGAgaccttttgaatgtaatgaatgtgggaaggcctttaaccACCGACCAGAACTTAAAAGGCATAccagaatccatactggagaaaaaccatatgagtgtaatgaatgtgggaatgCCTTTCGCCTTAGTACACACTTAACTCGACATaggagaattcatactggtgagaaaccttatgaatgtaatgaatgtgtaTTGTCATTCCGCTTAAAAACACAGCTTACTCagcatcagaaaattcatactggggggcagctgggtggttcagtggcttgagaaccaggcctagagatgggaggtcct

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