Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name DDI2P1
Plot displaying the genomic locations of a retrocopy (in chr1) and its respective parental gene (in chrUn0093). Each line represents a retrocopy.
Species Oryctolagus cuniculus
Coordinates chr1:112507945-112508580  UCSC
Strand -
Parental Sequence XM_008249761.2
Parental seq. overlap 524 bp
Parental seq. overlap (%) 38.7%
Genomic Region Intergenic
Retrocopy Summary DDI2P1, located on chr1:112507945-112508580, is a retrocopy of the parental gene DDI2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name DDI2
Full Name N/A
Also known as NULL
Coordinate chrUn0093:663045-694798
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes DDI2P1
Bonobo Pan paniscus DDI2P1
Gorilla Gorilla gorilla DDI2P1
Orangutan Pongo abelii DDI2P1
Gibbon Nomascus leucogenys DDI2P1
Green monkey Chlorocebus sabaeus DDI2P1
Crab-eating macaque Macaca fascicularis LOC102124387P1
Rhesus Macaca mulatta LOC695047P1
Golden snub-nosed monkey Rhinopithecus roxellana LOC104677700P1
Marmoset Callithrix jacchus DDI2P1
Mouse lemur Microcebus murinus LOC105870486P1
Mouse Mus musculus Ddi2P1
Rat Rattus norvegicus Ddi2P1
Cow Bos taurus LOC515551P1
Sheep Ovis aries LOC101110160P2
Dolphin Tursiops truncatus LOC101329993P2
Horse Equus caballus DDI2P1
Dog Canis familiaris DDI2P1
Panda Ailuropoda melanoleuca DDI2P1
Cat Felis catus LOC101083950P1
Velvety free-tailed bat Molossus molossus DDI2P1
Kuhl's pipistrelle Pipistrellus kuhlii DDI2P1
Greater horseshoe bat Rhinolophus ferrumequinum DDI2P1
Sloth Choloepus didactylus LOC119527911P1
Human Homo sapiens Without Homology
Baboon Papio anubis Without Homology
Chinese hamster Cricetulus griseus Without Homology
Pig Sus scrofa Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>DDI2P1
CCAGCCTTGATCCGTAGCATGCTGCTGTCCAATCCTCACGACCTGTCCCTGCTGAAGGAACGCAACCCTTCCTTGGCAGAAGCTCTGCTCAGCGGGAACCTTGAAACATTTTCTCAGGTCTTGATGGAGCAGCAGAGGGAGAGAGCCTTGCGAGAGCAAGAGAGGCTTCGTCTCTACTCCGCGGACCCATTTGATAGGGAAGCTCAGGCCAAAATAGAAGAAGAAATCCGGCAGCAGAACATTGAAGAAAACATGAATATAGCAATGGAAGAGGCCCCCGAGAGTTTTGGGCAAGTGGCAATGCTCTACATCAACTGCAAAGTGAATGGACATCCTTTGAAGGCTTTTGTTGACTCGGGTGCCCAGATGACCATTATGAGCCAAGCGTGTGCGGAGAGATGCAACATCATAAGACTGGTGGACCGACGATGGGCTGGAGTGGCTAAAGGAGTGGGCACACAAAGAATCATCGGCCGCGTTCATTTAGCTCAAATTCAGATTGAAGGAGACTTCCTGCAATGTTCTTTCTCTATACTTGAGGAGCAGCCCATGGACATGCTTCTCGGACTAGATATGCTGAAGAGGCATCAGTGTTCCATCGATTTGAAGAAAAATGTGCTGGTGATTGGCACCACT
>XM_008249761.2
CTTGCGTTTTAAATGAGCGGAGCACTTACTGTGGGAACGCCTTGGGGTTGCCCCTAACTAGTCTTTACCGAGCAGAGAGGGGTTGCACCAGCACCCTTGGGTCCCCGCTGGGTACAGTGGCCTTGGAGGACCTGCCTTAGCCCTGAGGATGTCGGAAGGCGTCGCAGCCCCGGAACGTGGACCTTGATTTCCTCCTGCAGTTATGAAATAGTTCCAAAAACCACTGCCCGCTACAGCTCGTCCTGCCCTGCCTTATGATCGTCTATGCTGAAAGACCACTCACAGACAACCACAGATCCCTGGCTTCTTACGGCTTAAAAGATGGGGACGTTGTGATTTTACGACAGAAGGAGAATGCAGACCCTCGACCTCCAGTGCAGTTCCCAAGCTTACCCCGGATAGACTTCAGCAGCATCGCTGTGCCTGGCACATCCAGTCCCCGGCAGCGTCCGCCGGCCGCAGTGAAGCCGTCCCACTCGTCTGGAGAAATGGCTGCATCTCCTCAGGGCTTGGACAATCCAGCCTTGCTCCGAGACATGTTGCTGGCCAACCCGCACGAGCTGTCCCTGCTGAAGGAGCGCAACCCACCCCTGGCCGAAGCTCTGCTCAGTGGAGATCTTGAGAGATTTTCCAGGGTCCTGGTAGAGCAGCAGCAGGACCGGGCCCGGAGAGAGCAAGAGAGGATCCGTCTCTTTTCTGCTGACCCCTTTGATCTTGAAGCTCAGGCAAAGATAGAAGAAGACATAAGGCAACAGAACATCGAGGAAAACATGACGATAGCAATGGAAGAGGCCCCGGAAAGTTTTGGCCAAGTAGTGATGCTTTATATTAACTGCAAAGTGAATGGACATCCTGTTAAAGCCTTCGTTGACTCAGGTGCCCAGATGACTATTATGAGCCAAGCTTGTGCGGAAAGGTGTAACATAATGAGATTGGTGGACCGTCGGTGGGCTGGGATTGCCAAAGGAGTGGGCACCCAGAAGATTATTGGAAGGGTACATCTGGCTCAGGTTCAGATTGAAGGAGATTTCCTGGCGTGTTCCTTCTCCATCCTTGAGGAGCAGCCCATGGACATGCTTCTGGGACTGGACATGCTGAAACGGCACCAGTGCTCCATCGACCTCAAGAAGAACGTGCTCGTGATTGGCACCACAGGTTCACAAACCACCTTCCTGCCGGAGGGGGAGCTGCCGGAGTGTGCTCGGCTGGCGTACGGGGCTGTGCGGCCGGAGGAGATTGCAGACCAAGAGTTAGCGGAAGCCATTCAGAAATCAGCAGAGGATGCAGAGCGTCAGAAGCCATGATGCATGTAGTGTGTGTGTGCTGCAGCTGGAGTGGGCCCCAGACCAG

Publications

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