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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name UBA52P3
Plot displaying the genomic locations of a retrocopy (in chr14) and its respective parental gene (in chr2). Each line represents a retrocopy.
Species Sus scrofa
Coordinates chr14:28257960-28258169  UCSC
Strand +
Parental Sequence NM_214211.1
Parental seq. overlap 177 bp
Parental seq. overlap (%) 33.8%
Genomic Region Intergenic
Retrocopy Summary UBA52P3, located on chr14:28257960-28258169, is a retrocopy of the parental gene UBA52. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name UBA52
Full Name N/A
Also known as UBCEP2
Coordinate chr2:59238802-59241512
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Gorilla Gorilla gorilla UBA52P8
Gibbon Nomascus leucogenys UBA52P9
Golden snub-nosed monkey Rhinopithecus roxellana UBA52P10
Marmoset Callithrix jacchus UBA52P16
Mouse lemur Microcebus murinus UBA52P10
Cow Bos taurus UBA52P4
Dog Canis familiaris RPS27AP8
Cat Felis catus UBA52P13
Pale spear-nosed bat Phyllostomus discolor UBA52P39
Velvety free-tailed bat Molossus molossus RPS27AP23
Greater horseshoe bat Rhinolophus ferrumequinum UBA52P23
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Orangutan Pongo abelii Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Panda Ailuropoda melanoleuca Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>UBA52P3
AATGCAGATCTTTGTAAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGAGCCCAGTGACACCATTGAGAATGTCAAGGGGAAGATTCAAGAAAAAGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGT
>NM_214211.1
CTCTTCAACGAGGCGGCCGAGCAGCAGACGCAGAGATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGTGATACCATTGAGAATGTCAAAGCTAAAATCCAGGATAAGGAGGGCATCCCACCTGACCAGCAGCGTCTGATTTTTGCTGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTACAATATCCAGAAAGAGTCCACCCTGCACTTGGTGCTTCGTCTGCGAGGTGGCATCATCGAGCCCTCCCTCCGCCAGCTCGCTCAGAAATACAACTGCGACAAGATGATCTGCCGCAAGTGTTATGCTCGCCTGCATCCCCGCGCGGTGAACTGCCGCAAGAAGAAGTGTGGCCACACCAACAACCTGCGCCCCAAGAAGAAGGTCAAATAAGACCTTTCCACCAGCTTCTCCTTTGTCTGCAGGGCAGCCTCCTGCCCAAGCCCCATGGCCCTGGGGCCTCAATAAAGTTTCCCTTTCGTTGACTGGAGCAGT

Publications

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