Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Retrocopy Name MKRN1P6
Plot displaying the genomic locations of a retrocopy (in chr15) and its respective parental gene (in chr7). Each line represents a retrocopy.
Species Pan paniscus
Coordinates chr15:6097370-6097777  UCSC
Strand -
Parental Sequence XM_008965956.2
Parental seq. overlap 334 bp
Parental seq. overlap (%) 10.5%
Genomic Region Intergenic
Retrocopy Summary MKRN1P6, located on chr15:6097370-6097777, is a retrocopy of the parental gene MKRN1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name MKRN1
Full Name N/A
Also known as -
Coordinate chr7:132391357-132417395
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens MKRN1P4
Chimpanzee Pan troglodytes MKRN1P6
Gorilla Gorilla gorilla MKRN1P6
Orangutan Pongo abelii MKRN1P6
Gibbon Nomascus leucogenys MKRN1P1
Green monkey Chlorocebus sabaeus MKRN1P4
Crab-eating macaque Macaca fascicularis MKRN1P2
Rhesus Macaca mulatta MKRN1P2
Baboon Papio anubis MKRN1P2
Golden snub-nosed monkey Rhinopithecus roxellana MKRN1P2
Marmoset Callithrix jacchus MKRN1P2
Mouse Mus musculus Mkrn1P3
Rat Rattus norvegicus Mkrn1P1
Chinese hamster Cricetulus griseus Mkrn1_1P2
Rabbit Oryctolagus cuniculus MKRN1P3
Cow Bos taurus MKRN1P3
Sheep Ovis aries MKRN1P4
Dolphin Tursiops truncatus MKRN1P1
Horse Equus caballus MKRN1P1
Dog Canis familiaris MKRN1P2
Panda Ailuropoda melanoleuca MKRN1P1
Cat Felis catus MKRN1P1
Velvety free-tailed bat Molossus molossus MKRN1P2
Greater horseshoe bat Rhinolophus ferrumequinum MKRN1P4
Egyptian rousette Rousettus aegyptiacus MKRN1P2
Sloth Choloepus didactylus MKRN1P1
Mouse lemur Microcebus murinus Without Homology
Pig Sus scrofa Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>MKRN1P6
TGCATTGAAGCACACGAGAAAGATATGGAACTCTCGTTTGCTGTGCAGCGTGGTATGGACAAGGTGTGTGGCATCTGCATGGAGGTTGTCTATGAGAAGGCCAACCCCAATGACCGCCGCTTTGGCATTCTTTCCAATTGCAACCATTCCTTCTGTATTAGGTGTATCCGCAGGTGGAGAAGTGCCAGACAGTTTGAGAACAGGATCGTCAAGTCTTGCCCACAGTGCAGGGTCACCTCCGAATTGGTCATTCCCAGTGAGTTCTGGGTGGAGGAGGAGGAAGAGAAGCAGAAACTTATTCAGCAATACAAGGAGGCAATGAGCAACAAGGCCTGCAGGTATTTTGCGGAAGGCAGGGGTAACTGCCCATTTGGAGACACATGCTTTTACAAGCATGAATACCCTGAG
>XM_008965956.2
GCGGGAGGGCGGGGACCGGCGTCGTCTCGATCTCTGCAGCCCTCGCGGCCCCCGCTGCCGCCGCGTTCCCCCAGTCACTGCGTCAACCCCCGCTGGGCCGCGGAGCCCTCAGCGCTGTCCGCGGAGGCCTGGCGGTGCGCGATTGCTGCGGAGCCCCGGGGCTGCAGCGCCGCTTACACTTCCCTGAGCGCTGCCTGAGCTGGCTGCGAGCGCATCGGGGAGAGGTGGGCTGGCTCCTCCCCTGCCGCTGGAAGGATGCCCCCGCCGCTGCCTTCGGCTCCCGGGGCTCGGGAGGTGGTCACTTCAGGCCGGTCTCCCAGCGATCCTCTCCGGGCCTAGACACCCCGCCGAGGGCCCCAGCGAGCTTGCCTGGCTCCCGGCCCTCTCCTCTCTCCGTGCCATCCGTTTGTAACGTCTTTTCACGTCCCTCCGTCCCTCCGCCCCCCATCCTCCGCCCAACTGTATTTTATGCATGGGGTTTGTAAGGAAGGAGACAACTGTCGCTACTCGCATGACCTCTCTGACAGTCCGTATAGTGTAGTGTGCAAGTATTTTCAGCGAGGGTACTGTATTTATGGAGACCGCTGCAGATATGAACATAGCAAGCCATTGAAACAGGAAGAAGCAACTGCTACAGAGCTAACTACAAAGTCATCCCTTGCTGCTTCCTCAAGTCTCTCATCGATAGTTGGACCACTTGTTGAAATGAATACAGGCGAAGCTGAGTCAAGAAATTCAAACTTTGCAACTGTAGGAGCAGGTTCAGAGGACTGGGTGAATGCTATTGAGTTTGTTCCTGGGCAACCCTACTGTGGCCGTACTGCGCCTTCCTGCACTGAAGCACCCCTGCAGGGCTCAGTGACCAAGGAAGAATCAGAGAAAGAGCAAACCGCCGTGGAGACAAAGAAGCAGCTGTGCCCCTATGCTGCAGTGGGAGAGTGCCGATACGGGGAGAACTGTGTGTATATCCACGGAGATTCTTGTGACATGTGTGGGCTGCAGGTCCTGCATCCAATGGATGCTGCCCAGAGATCGCAGCATATCAAATCGTGCATTGAGGCCCATGAGAAGGACATGGAGCTCTCATTTGCCGTGCAGCGCAGCAAGGACATGGTGTGTGGGATCTGCATGGAGGTGGTCTATGAGAAAGCCAACCCCAGTGAGCGCCGCTTCGGGATCCTCTCCAACTGCAACCACACCTACTGTCTCAAGTGCATTCGCAAGTGGAGGAGTGCTAAGCAATTTGAGAGCAAGATCATAAAGTCCTGCCCAGAATGCCGGATCACATCTAACTTTGTCATTCCAAGTGAGTACTGGGTGGAGGAGAAAGAAGAGAAGCAGAAACTCATTCTGAAATACAAGGAGGCAATGAGCAACAAGGCGTGCAGGTATTTTGATGAAGGACGTGGGAGCTGCCCATTTGGAGGGAACTGTTTTTACAAGCATGCGTACCCTGATGGCCGTAGAGAGGAGCCACAGAGACAGAAAGTGGGAACATCAAGCAGATACCGGGCCCAACGAAGGAACCACTTCTGGGAACTCATTGAGGAAAGAGAGAACAGCAACCCCTTTGACAACGATGAAGAAGAGGTTGTCACCTTTGAGCTGGGCGAGATGTTGCTTATGCTTTTGGCTGCAGGTGGGGACGACGAACTAACAGACTCTGAAGATGAGTGGGACTTGTTTCATGATGAGCTGGAAGATTTTTATGACTTGGATCTATAGCAACCTTGCGTGGCGTGTGAACTGGTCTGCTGACCTCAGACAGCAGCTGTCCCCTGTGGTGGTGTGGCAGTGCCTGTGTTCTCTCCTAGGCAGGCCTCTCAACTCCAGGTGCTGTCCTAAGAATTTTTACCCAGGGCCTGTCTTCTCAACCCCTCACCTTTCCCTGAGGAGTGTGTTGTTTTCCCTGTTGAAAAAAGTTACAAAAATAAATCTTAAAGTTAGTTTTTTGTAACACGAATTTAACTGTCAGACAGTTAGTGTAGGTGTGTTGCGTCATCTGTTTTCAACCAGATTGCATTTATGGACTTTTCACACACTCATTTTGAGGACCCCAGGTTCAAAAGTAAAAGCAGTGGCCCTGCTTTGGGGTCCAAGAATAGGAGTGATGGGTGAAGGGACCTAAGCTGGCCAATAGCCCTCTGCCCCAGACATGGGATGTGGATCCTTGAGGTTTCTGAAATCTGCACATCTGTGTTTTTATATCTGTTCCCTACCCTGTAATCCCTACCACGTGCACTTGTTCTGTGGTTTTGGTCTCTTGTTTAATTGCACACAAGTAATACTACTGGGTAACCAGAATCAGGTGTGAATGTGTTGAGATTTTTTTACTGTTTTGCATGATAGGAAAATTGAGAAAGAATACGTATAAAAGATAGAGAGGCATAACATCAATGCAGAGTTGGAAGTTGGCTCCCAAGGGCTGACATGGTGTGAGTGTGTGGGTGTGTGATAAGCTTCTCATCCCTGCATAGATGCAGTATTCTTAGCCTTAGTAGAAAAACCTGGTTTAGTGGTTTAAGCCTTGTGTGGCAGATAGATCTTAAAGGGCAAAGCAGTATATTGGTAGTTGTCAGTATAGCAGTGCTAGCTCTGTCTATATAAATAGAGAAATGGGGTTAGCCATAGAGGTTAAAACTACCTGGTTATCCCAAATATTAACACAAACTGGGTCTTGGATACACAGTTGTATTTAATGTTTTACGATCTAGCCTTTCCAGTACAGGCACTTTCTGAGAAACCTTTGTCCTCACTTGAGGCATTTTGTTGTCGGGTTTTTGTGTTTGTTTTTGTGGGTATTTGCCTCATTCCACCCCTGAGCTTTCAGGTAGACAGACGTGATTCAAAACTCTGTTCTAAGGTGTTTATTGTAGTGGAGTAATGGGTTTGCAGTGATAAGTCATACTTTTCCACCGAAAGGGAGGGCTTGGGAATCCCTGAGATTAGCTAAAGTTAAGTTGTTGGAAGAATTCCTTGATTGGAAATTGTACCTTTGTGTTTTGTTGCTCTGTTTCCTGAAAATAACTCGGGGATACTCCTGGTTTGTCCATCTACTGCTTTGATTCCTTGGATCCCACCCATTCTTTCACTTTAAGAAAAAACAAATAATTGTTGCAGAGGTCTCTGTATTTTGCAGCTGCCCTTTTGTAAGAAGCACTTTTCCCAAATAAAACAATTAAAAAAAAA

Publications

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