RCPedia: Rtcs

Summary

Retrocopy Name	SUMO2P25	Plot displaying the genomic locations of a retrocopy (in chr17) and its respective parental gene (in chr5). Each line represents a retrocopy.
Species	Gorilla gorilla
Coordinates	chr17:17266008-17266438 UCSC
Strand	-
Parental Sequence	XM_004040976.3
Parental seq. overlap	358 bp
Parental seq. overlap (%)	33.6%
Genomic Region	Intergenic
Retrocopy Summary	SUMO2P25, located on chr17:17266008-17266438, is a retrocopy of the parental gene SUMO2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name	SUMO2
Full Name	N/A
Also known as	SUMO2
Coordinate	chr5:7347929-7363097
Strand	+
Gene summary	N/A

Homology

Species	Scientific Name	Retrocopy
Human	Homo sapiens	SUMO2P25
Chimpanzee	Pan troglodytes	SUMO2P6
Bonobo	Pan paniscus	SUMO2P7
Orangutan	Pongo abelii	SUMO2P8
Gibbon	Nomascus leucogenys	SUMO2P2
Green monkey	Chlorocebus sabaeus	SUMO2P3
Crab-eating macaque	Macaca fascicularis	SUMO2P10
Rhesus	Macaca mulatta	SUMO2P14
Baboon	Papio anubis	LOC100998135P10
Golden snub-nosed monkey	Rhinopithecus roxellana	SUMO2P3
Marmoset	Callithrix jacchus	SUMO2P1
Mouse lemur	Microcebus murinus	SUMO2P15
Dolphin	Tursiops truncatus	SUMO2P5
Horse	Equus caballus	SUMO2P6
Pale spear-nosed bat	Phyllostomus discolor	SUMO2P6
Greater horseshoe bat	Rhinolophus ferrumequinum	SUMO2P5
Egyptian rousette	Rousettus aegyptiacus	SUMO2P3
Mouse	Mus musculus	Without Homology
Rat	Rattus norvegicus	Without Homology
Chinese hamster	Cricetulus griseus	Without Homology
Rabbit	Oryctolagus cuniculus	Without Homology
Pig	Sus scrofa	Without Homology
Cow	Bos taurus	Without Homology
Sheep	Ovis aries	Without Homology
Dog	Canis familiaris	Without Homology
Panda	Ailuropoda melanoleuca	Without Homology
Cat	Felis catus	Without Homology
Velvety free-tailed bat	Molossus molossus	Without Homology
Greater mouse-eared bat	Myotis myotis	Without Homology
Kuhl's pipistrelle	Pipistrellus kuhlii	Without Homology
Sloth	Choloepus didactylus	Without Homology
Tasmanian Devil	Sarcophilus harrisii	Without Homology
Opossum	Monodelphis domestica	Without Homology
Platypus	Ornithorhynchus anatinus	Without Homology
Chicken	Gallus gallus	Without Homology
Turkey	Meleagris gallopavo	Without Homology
Zebra Finch	Taeniopygia guttata	Without Homology
Budgerigar	Melopsittacus undulatus	Without Homology
Painted Turtle	Chrysemys picta	Without Homology
Lizard	Anolis Carolinensis	Without Homology
Frog	Xenopus tropicalis	Without Homology
Zebrafish	Danio rerio	Without Homology
Drosophila	Drosophila melanogaster	Without Homology

Expression

Related Sequence

>SUMO2P25
AAAAGCCTACGGCAGGAGTCAAGACTGAAAACAACAGTCACATGAATTTGAAGGTGGCAGGGAAGATGGTTTGTGGTACAGTTTAAAGTTAAGAGCCATATACCACTTAGTAAGCTAATGAAAGCCTATTGTGAATGACAGGATTTGCCAGTGAGGTAGAGCAGATTCTGATTTGATAGGCAGCCAATCAGTCAAACAGACACACCTGCACAGGTGCACATGGAGGATGAAGATACAATTGATGGGGTCCAGCATCAGACAGAAAGTACCTACTAAAAAGGGAGCCGGCTACGTTATTCCAGATTTCTGTTCCTACAGACCAAGAATACATTCTCAATGAGAAAACCACGACTTCTTTCCACCACATCCTGACAACTACAGCAGTTTCTCTAGTCTTTCCTTTTCCCTTTCCCTATCGCTTTATTGTAc

>XM_004040976.3
CACGCAGGGTGGGGGGAGGGAGCGCACGACGTGCGCGCACCCTCTCCCCTCGTCCACCgctgccgcctccttcttctgccgctcctggtgctgcttgtgtgctCGTTTGGTGCGGACCTGGTACCTCTTTTGTGAAGCGGCAGCTGAGGAGACTCCGGCGCTCGCCATGGCCGACGAAAAGCCCAAGGAAGGAGTCAAGACTGAGAACAACGATCATATTAATTTGAAGGTGGCGGGGCAGGATGGTTCTGTGGTGCAGTTTAAGATTAAGAGGCATACACCACTTAGTAAACTAATGAAAGCCTATTGTGAACGACAGGGATTGTCAATGAGGCAGATCAGATTCCGATTCGACGGGCAACCAATCAATGAAACAGACACACCTGCACAGTTGGAAATGGAGGATGAAGATACAATTGATGTGTTCCAACAGCAGACGGGAGGTGTCTACTGAAAAGGGAACCTGCTTCTTTACTCCAGAACTCTGTTCTTTAAAGACCAAGATTACATTCTCAATTAGAAAACTGCAATTTGGTTCCACCACATCCTGACTACTACCGTATAGTTTTCTCTATTCTTTCATTTCCCCCTTCCCCATTCCTTTATTGTACATAAAGTAACTGGTATATGTGCACAAGCATATTGCATTTTTTTTTTTTTTAACTAAACAGCCAATGGTATGTTTTGATTGACATCAAGTGGAGACGGGATGGGGAAAAATACTGATTCTGTGAAAATACCCCCTTTCTCCATTAGTGGCATGCTCATTCAGCTCTTACCTTTATATTCCAGTAAGTTATTTTGCTCTCACTGTTTTaacaaaaaaaaaaaaaacaacaacataaaaaTCCTTGCATACCTTGTTCAATTGGAGAATTTTAATGTTTTTCATTTATCATTGTAAAACCAAGGACAATTTTATAACTTTTTTGTACGTAGCTGTTACATGTAGGGCAATCTGTCTTTAAGTAGGGATAAATTACTCTAAAACAAAAAAGAATCCTAGATAGTTTTCCCTTCAAGTCAAGCGTCTTGTTGTTTAAATAAACTTCTTGTTTAAAATGA

>XM_004040976.3 

CACGCAGGGTGGGGGGAGGGAGCGCACGACGTGCGCGCACCCTCTCCCCTCGTCCACCgctgccgcctccttcttctgccgctcctggtgctgcttgtgtgctCGTTTGGTGCGGACCTGGTACCTCTTTTGTGAAGCGGCAGCTGAGGAGACTCCGGCGCTCGCCATGGCCGACGAAAAGCCCAAGGAAGGAGTCAAGACTGAGAACAACGATCATATTAATTTGAAGGTGGCGGGGCAGGATGGTTCTGTGGTGCAGTTTAAGATTAAGAGGCATACACCACTTAGTAAACTAATGAAAGCCTATTGTGAACGACAGGGATTGTCAATGAGGCAGATCAGATTCCGATTCGACGGGCAACCAATCAATGAAACAGACACACCTGCACAGTTGGAAATGGAGGATGAAGATACAATTGATGTGTTCCAACAGCAGACGGGAGGTGTCTACTGAAAAGGGAACCTGCTTCTTTACTCCAGAACTCTGTTCTTTAAAGACCAAGATTACATTCTCAATTAGAAAACTGCAATTTGGTTCCACCACATCCTGACTACTACCGTATAGTTTTCTCTATTCTTTCATTTCCCCCTTCCCCATTCCTTTATTGTACATAAAGTAACTGGTATATGTGCACAAGCATATTGCATTTTTTTTTTTTTTAACTAAACAGCCAATGGTATGTTTTGATTGACATCAAGTGGAGACGGGATGGGGAAAAATACTGATTCTGTGAAAATACCCCCTTTCTCCATTAGTGGCATGCTCATTCAGCTCTTACCTTTATATTCCAGTAAGTTATTTTGCTCTCACTGTTTTaacaaaaaaaaaaaaaacaacaacataaaaaTCCTTGCATACCTTGTTCAATTGGAGAATTTTAATGTTTTTCATTTATCATTGTAAAACCAAGGACAATTTTATAACTTTTTTGTACGTAGCTGTTACATGTAGGGCAATCTGTCTTTAAGTAGGGATAAATTACTCTAAAACAAAAAAGAATCCTAGATAGTTTTCCCTTCAAGTCAAGCGTCTTGTTGTTTAAATAAACTTCTTGTTTAAAATGA

Publications

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