Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC100390144P3
Plot displaying the genomic locations of a retrocopy (in chr7) and its respective parental gene (in chr6). Each line represents a retrocopy.
Species Callithrix jacchus
Coordinates chr7:7055314-7055897  UCSC
Strand +
Parental Sequence XM_035304205.1
Parental seq. overlap 461 bp
Parental seq. overlap (%) 26.7%
Genomic Region Intragenic (TUBAL3)
Retrocopy Summary LOC100390144P3, located on chr7:7055314-7055897, is a retrocopy of the parental gene LOC100390144. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC100390144
Full Name N/A
Also known as -
Coordinate chr6:35302576-35310919
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens TUBA3EP1
Chimpanzee Pan troglodytes TUBA3EP1
Bonobo Pan paniscus LOC100973193P2
Gorilla Gorilla gorilla LOC101135000P2
Orangutan Pongo abelii TUBA8P1
Gibbon Nomascus leucogenys TUBA8P1
Green monkey Chlorocebus sabaeus TUBA3EP1
Crab-eating macaque Macaca fascicularis LOC102121218P2
Rhesus Macaca mulatta TUBA3EP2
Baboon Papio anubis TUBA8P4
Golden snub-nosed monkey Rhinopithecus roxellana LOC115898194P1
Dolphin Tursiops truncatus TUBA8P1
Horse Equus caballus LOC100072403P1
Dog Canis familiaris LOC100855995P1
Panda Ailuropoda melanoleuca TUBA8P1
Cat Felis catus TUBA8P1
Pale spear-nosed bat Phyllostomus discolor TUBA8P1
Velvety free-tailed bat Molossus molossus TUBA8P1
Greater horseshoe bat Rhinolophus ferrumequinum TUBA8P3
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC100390144P3
GTCACTGCCTCCCTCCGGTTTGAAGGGCCCTTGAATGTGGACCTAATTGAATTCCAGACCAACCTAGTACCTTACCCGAGAATACATTTCCCCATCACCACCTTTGCTCCCATTGTCTCTGCTGACAAAGCCTACCATGAGCGGTTCTCCGTGCCAGACATCACTACTGCTTGCTTTGAGTCCTCCAACCAGCTGGTCAAGTGTGACCCTCGGCTTGGGAAGTACATGGCCTGCTGCCTACTCTACAGAGGGGACGTGGTCCCTAGGGAAGCGAGTGCAGCAATCGCAGCCATGAAGGCCAGGCACTCTGTTCAGTTTGTAGATTGGTGTCCAACGGGTTTCAAGGTGGGCATCAACAGTCAGCCGCCCACGGTGATGCCAGGTGGGGACCTGGCCAAAGCCCACCAGGCCCTCTGCATGCTGAGCAACACCACGGCGATCGTGGAGGCCTGGGCCCGCCTGGACCACAAGTTTGACCTCATGTACGCCAAGAGGGCATTTTTGCACTGGTACATCAGAGAAGGCATGGAAGAAGCGGAATTCTTGGAGGCCAGGGAAGACCTGGCGGCCCTGGAGAGGGATTA
>XM_035304205.1
AAGACACTGCACCCACGCAGCCTTTGATGACACCGCTGCCTTCCCGCCAATCCTGCATCCAATCAGAGAGCGTCCCCACTACACGTGTTGCATAATGGCCAGTCACAACTGGGATCCGGCCCTCGGTCCGCCTCTTAGGAACTCCGAGCCAATGGTGGCCTAGCACCAGCAAGCCAATCCCGGGCAGCGCACGAGAGCAGGAGGTTGCAGTTTCGCTAGCGGCGGCAGCGGTTGAGGTCAGCTAGAGTTCGGGTAGTAGCATTGGGCTGCAGCGGAGTTCACCATGCGCGAGTGTATCTCTATCCACGTGGGGCAGGCAGGTGTCCAGATCGGCAATGCCTGCTGGGAACTGTACTGCCTTGAACATGGAATTCAGCCCGATGGTCAGATGCCAAGTGATAAAACCATCGGTGGCGGGGACGACTCCTTCAACACGTTCTTCAGTGAGACTGGGGCTGGCAAGCACGTGCCCAGAGCAGTGTTTGTGGACCTGGAGCCCACTGTGGTCGATGAAGTGCGCACAGGGACCTACAGGCGGCTCTTCCACCCGGAGCAGCTGATGACCGGGAAGGAAGATGCAGCCAATAATTACGCCAGAGGCCATTACACCATCGGCAAGGAGATTGTCGACCTGGTCCTGGACCGGATCCGCAAACTGGCGGATCTGTGCACAGGACTGCAGGGCTTCCTCATCTTCCACAGCTTTGGGGGCGGCACTGGCTCTGGGTTCGCATCTCTGCTCATGGAGCGGCTCTCAGTGGATTACGGCAAGAAGTCCAAGCTAGAGTTTGCCATTTACCCAGCCCCCCACATCTCCACAGCCGTGGTGGAGCCCTACAACTCCATCCTGACCACCCACACGACCCTGGAACATTCTGACTGTGCCTTCATGGTCGACAATGAAGCCATCTATGACATATGTCGGCGCAACCTGGACATCGAGCGTCCCACGTACACCAGCCTCAATCGTCTGATTGGGCAGATTGTGTCCTCTATCACGGCCTCCCTGCGGTTCGATGGGGCCCTGAATGTGGACTTGACAGAATTCCAGACCAACCTAGTGCCTTACCCTCGCATCCATTTCCCCCTGGCCACCTATGCCCCGGTCATCTCAGCCGAGAAGGCCTACCACGAGCAGCTGTCTGTGGCTGAGATCACCAATGCTTGCTTCGAGCCAGCCAATCAGATGGTCAAGTGTGACCCTCGCCATGGCAAATACATGGCCTGTTGCATGTTGTACAGGGGGGACGTGGTCCCAAAAGATGTCAATGCAGCCATCGCCACCATCAAGACCAAGCGCACCATCCAGTTTGTGGATTGGTGCCCGACTGGATTTAAGGTTGGCATTAACTACCAGCCCCCCACGGTGGTCCCTGGGGGAGACCTGGCCAAGGTACAGCGGGCTGTGTGCATGCTGAGCAACACCACGGCCATCGCGGAGGCCTGGGCCCGCCTGGACCATAAGTTTGATCTCATGTATGCCAAGCGGGCCTTCGTGCACTGGTACGTGGGGGAAGGCATGGAGGAGGGGGAGTTCTCCGAGGCCCGCGAGGACCTGGCAGCTCTGGAGAAGGATTATGAAGAGGTGGGCGTGGAttctgtggaggctgaggctgaagaagtCGAAGAATACTGAGGGGAGGGTGTGGTGGGTTCTCCCCTGCCACCCCCAGGATGGCTGCTTTCGAATTGTTTGCAAATAAAGGTTCTGTATAAAACCAAGA

Publications

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