| Retrocopy Name | Ubqln1P2 |
|
| Species | Rattus norvegicus | |
| Coordinates | chrX:18724969-18725313 UCSC | |
| Strand | - | |
| Parental Sequence | NM_053747.2 | |
| Parental seq. overlap | 275 bp | |
| Parental seq. overlap (%) | 12.1% | |
| Genomic Region |
Intergenic |
|
| Retrocopy Summary | Ubqln1P2, located on chrX:18724969-18725313, is a retrocopy of the parental gene Ubqln1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
| Gene Name | Ubqln1 |
| Full Name | ubiquilin 1 |
| Also known as | Da41 |
| Coordinate | chr17:6840441-6878842 |
| Strand | + |
| Gene summary | Enables protein domain specific binding activity. Predicted to be involved in several processes, including macroautophagy; positive regulation of cellular protein metabolic process; and regulation of signal transduction. Located in cytoplasm. Orthologous to human UBQLN1 (ubiquilin 1). [provided by Alliance of Genome Resources, Apr 2022] |
| >Ubqln1P2 |
| TTCAGCACCCCAGGAATGCAGAGCCTGCTGCAGCAGATAACTGAAAATCCCCAGCTGATTCAGAATATGCTGTCTGCACCCTACATGAGAAGCATGATGCAGTCGCTGAGCCAGAATCCAGATATGGCTGCCCAGATGATGCTGAGTAGCCCACTGTTTACGGCGAATCCTCAGCTGCAGGAGCAGATGCGTCCACAGCTCCCGAATTTCCTGCAGCAGATGCAGAGTCCAGAAACCATCGCGGCCATGTCAAACCCGAGAGCGATGCAAGCGCTACTGCAGATCCAGCAGGGGCTACAGACACTAGCCACTGAAGCACCTGGCCTCATTCCAGGCTTCACTCCA |
| >NM_053747.2 |
| GGAAGCGGCGGCGACGCGGAGAGTCCCCGCGTCCACACGGCAGCCGATCGCCCACCGGGGCCTGCACCCGCAGCCCGCGTCTACGCACCGTCGGTGGCCCCGCAACCTGTCGCGCCCCGCGGACCCGGCCGCAGCCCCCAGTGTCGCGCTCGCCTGAGTCACCGCCATGGCCGAGAGCGCAGAGAGCGGCGGCCCACCGGGCGCTCAGGACAGTGCGGCCGACAGCGGCCCCGCAGAGCCCAAGATCATGAAGGTCACGGTGAAGACGCCTAAAGAGAAGGAAGAGTTCGCTGTGCCCGAGAACAGCTCGGTCCAGCAGTTCAAAGAGGAAATCTCAAAACGTTTCAAATCTCATATTGACCAACTTGTGTTGATATTTGCTGGAAAAATTTTAAAAGATCAAGATACTTTGAGTCAGCATGGGATTCATGATGGACTTACGGTTCACCTTGTCATCAAAACCCAAAACAGGCCGCAAGATAATTCAGCTCAGCAAACAAATACCACTGGAAACAGTGTGACCAGTTCACCAGCTCCTGACAGTAACCCCACGTCTGGGCCTGCTGCTAACAGCTCCTTTGGTTTAGGTGGACTTggaggacttgcaggtcttagtagcttgggtttaaataccaccaacttctctgaactacagagccaaatgcagcggcaactTTTGTCTAACCCTGAAATGATGGTCCAGATCATGGAAAACCCCTTTGTGCAGAGCATGCTCTCAAACCCTGACCTGATGCGGCAGCTGATCATGGCCAACCCACAGATGCAGCAGCTGATACAGAGAAACCCAGAGATCAGTCACATGCTCAATAACCCAGACATaatgcgacagACATTGGAACTTGCCAGAAACCCAGCGATGATGCAGGAAATGATGAGAAACCAGGACCGAGCCTTGAGCAACCTAGAAAGTATCCCTGGGGGCTACAACGCCTTACGGCGCATGTACACAGATATTCAGGAGCCCATGCTAAACGCTGCGCAAGAGCAGTTTGGTGGTAATCCATTTGCTTCCTTAGTGAGCAGTCCGTCCTCAGCAGAAGGGACTCAGCCTTCTCGAACAGAAAATAGGGATCCGCTACCTAACCCTTGGGCTCCACAGACTCCCCAGAGCTCTCCAGCCTCTGGCAGCACTGGCAGCACCACTAACACAGTGAGCACCTCTGCTGGCAATGCCACCAGTACCCCGGCGGGACAGGGCACCTCAGGGCCCAACTTGGTGCCTGGAGCAGGAGCTAGTATGTTCAACACGCCAGGGATGCAAAGCTTGTTGCAGCAAATAACTGAGAACCCTCAGCTCATGCAGAACATGCTGTCTGCCCCCTACATGAGAAGCATGATGCAGTCACTGAGCCAGAACCCCGACCTTGCCGCACAGATGATGCTGAATAACCCCCTATTTGCTGGGAACCCTCAGCTTCAAGAGCAAATGAGACAACAGCTCCCAACCTTCCTCCAACAAATGCAGAACCCCGACACACTGTCAGCCATGTCGAACCCTAGAGCCATGCAGGCGCTGCTGCAAATCCAGCAGGGCTTGCAGACGTTGGCCACAGAAGCTCCCGGCCTCATCCCAGGGTTTACTCCTGGCTTGGCAGCGGGCAATTCTGGAGGCCCTGCAGGAACCACTGCACCTAGCACTGCACCTGGTGAGGATACGAACCCCCAAGGGGGCGCTGCTGAGCCAGGCCACCAGCAGTTTATCCAGCAAATGCTGCAGGCCCTCGCCGGGGTGAACCCTCAGCTGCAGAGTCCAGAAGTCAGATTTCAACAGCAACTGGAACAGCTCAGTGCAATGGGATTCTTGAACCGTGAAGCAAACTTACAAGCACTGATAGCAACAGGGGGCGACATCAATGCGGCCATTGAAAGGTTGCTGGGTTCCCAGCCGTCATAGCAGCATTTCTGTATCCTGAAAAAATGTAATTTATTTTTGATAACGGCTCTTAAATCTTTAAAATAACCTGCTTTATTTCATTGGGATTCTGTGCTGTTGTAAAGGAAACCAATAGGAAGTCTCTGGAGGTGGAGTGCAGTAAGATGTGCGGGTTTCTGTGTCTTTGGAACAGTGGGAATCGATGTCTCTGGTTAAGGCCGCTGCATGCGTCAAACACTTGGCATTTGTTGTAATCTTTTAAACATCACCTTTTCTAATTGGGTGAACACATTTTTGTCCTGCATCTGTCCAACTAACTTGCTTTTTAAACATAGCCCTCTGGTAGTAATTTATGTAGAATAAAGGCATTAAAAAGCAGAT |
| PMID - Link | Title |
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